Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0868 ATGGTGGGAGCTACAGGAAGAGCCCTCCTCGCTCTCTCTCTAACCTCCAACCTATCTGCATTCGCACGCTTTTCTCATGGGCATCGCTTCCCACTTCTCAAACTCTCAACAAAACCCAGTAGGGTTTTGTTAGGGTTTAGGCCCCTCTGCAATGTCACCTCCACCACCACCACCAACAACAACACGGACACTACGGAATCCATCGATCCAGACCAAATCAAGCACTCTATTCTGCTTGAGAGACTCAGATTCAGGCACCTTAAGGACTCCGCCAAAACCCCAGAAATCAAGAATTCCACTAAACCGGTTGATTTCGCTGACAAGGGTCGTGAGAATGAGCTCAGGAAGTCAGAGAAGAAGAAGAAGTTGGTTAGCAGTTTTGAGGACTTGGGTCTCAGCGAGGAGGTAATGGGAGCCGTTAGGGAGATGGATATTGAGGTTCCCACTGAGATTCAGTGTATCGGCATCCCTGCTGTCTTGGAAGAGAAGAGTGTCGTTTTGGGATCTCATACTGGTTCCGGCAAGACTCTTGCATACATGCTTCCTCTTGTTCAGTTGCTAAGACGGGATGAACAATTAAATGGATTACTTATGAAGCCCAGGCGTCCCCGAGCTGTTGTGCTATGCCCTACGAGGGAATTGTCTGAGCAGGTGTTTCAAGTGGCAAAATCTATTAGCCATCATGGAAGATTCAGGTCTACAATGGTAAGTGGTGGTGGCCGTCTCAGGCCCCAGGAGGATTCATTAAATAACCCCATTGACATGGTAGTTGGTACTCCTGGTAGAATTCTGCAACACATTGAGGAGGGAAACATGGTATATGGGGACATAAAATACTTGGTATTGGATGAGGCTGACACAATGTTTGATCGAGGTTTTGGTCCTGATATTCGCAAGTTCATAGGCCCATTAAAGCATCGTGCCTCAAAACCTGATGGCCTTGGTTTTCAGACTATCTTGGTCACTGCAACCATGACAAAGGCAGTGCAAAAGTTGATTGATGAGGAGTTTCAAGGCATTCTGCATCTGCGAACATCAACACTGCATAAAAAGATTGCATCTGCTCGTCATGATTTTATTAAGCTGTCAGGTTCTGAAAACAAGCTGGAAGCATTACTACAGGTACTGGAGCCAAGCCTGGCAAAGGGGAATAGGGTGATGGTTTTTTGCAATACATTGGATTCTAGCCGTGCTGTGGACCATTTTCTCAGTGAAAATCAGATATCTACTGTCAATTACCATGGAGAGGTGCCAGCAGAGCAAAGGGTTGAAAACCTTAAGAAATTTAAGAGTGATGATGAAGATTGCCCTACACTGGTTTGCACAGACTTGGCTGCTAGAGGTCTGGACTTGGATGTTGATCATGTTATCATGTTTGATTTCCCTTTGAATTCTATTGACTACCTTCACCGCACTGGTAGAACAGCCCGTATGGGTGCAAAAGGGAAAGTAACTAGCTTGGTGGCAAAAAAAGACTTGATCTTGGCCACTCGAATAGAGGAAGCAATTAGGAGGAATGAGAGCTTGGAGGCTATTAGTAAAGAAAGTGTTCGGAGGGACATTGCTAGGACCCAAATAACTCAGCAGAAGGGGAAGAATACCAAATTGGTTAAAGTTTCCAAAGCTAAAAACAACTCTGCTGTCCGTGCCACTTCTAGAAAAGTATCAAAAAGCCCCTCCGTATCCAGAGGATCAAAAAATACTTCTGGTGTTAATGCCGCTTCGAGAAAAGCATTGAAGCCATTAAAATCAGCAAAGGCAGGAATTCAGGTTAAAAAATCTGTAAAATCTTCCAGCTCAAGTAGCTTGGGAAAAGCTTCATCAGGGAAGAAGCAAATAAGTAAAAGGGTCAGTGCTGGCAAATCTACAAATTCTAAACTTAGTGTCGTTGGTTTTAGGGGGCGGAGTTCATCTTCAAGTAAGAAGGAATCACAATTTTGA 1941 0.4472 MVGATGRALLALSLTSNLSAFARFSHGHRFPLLKLSTKPSRVLLGFRPLCNVTSTTTTNNNTDTTESIDPDQIKHSILLERLRFRHLKDSAKTPEIKNSTKPVDFADKGRENELRKSEKKKKLVSSFEDLGLSEEVMGAVREMDIEVPTEIQCIGIPAVLEEKSVVLGSHTGSGKTLAYMLPLVQLLRRDEQLNGLLMKPRRPRAVVLCPTRELSEQVFQVAKSISHHGRFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEEGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFIGPLKHRASKPDGLGFQTILVTATMTKAVQKLIDEEFQGILHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLAKGNRVMVFCNTLDSSRAVDHFLSENQISTVNYHGEVPAEQRVENLKKFKSDDEDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDLILATRIEEAIRRNESLEAISKESVRRDIARTQITQQKGKNTKLVKVSKAKNNSAVRATSRKVSKSPSVSRGSKNTSGVNAASRKALKPLKSAKAGIQVKKSVKSSSSSSLGKASSGKKQISKRVSAGKSTNSKLSVVGFRGRSSSSSKKESQF 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0868 646 MobiDBLite consensus disorder prediction 90 114 - -
Dere01g0868 646 MobiDBLite consensus disorder prediction 591 646 - -
Dere01g0868 646 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 156 343 IPR014001 -
Dere01g0868 646 SMART helicmild6 397 479 IPR001650 -
Dere01g0868 646 Pfam Helicase conserved C-terminal domain 368 479 IPR001650 -
Dere01g0868 646 CDD SF2_C_DEAD 356 488 - -
Dere01g0868 646 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 54 516 - -
Dere01g0868 646 MobiDBLite consensus disorder prediction 527 646 - -
Dere01g0868 646 Gene3D - 90 342 IPR027417 -
Dere01g0868 646 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 491 IPR027417 -
Dere01g0868 646 CDD DEADc 136 335 - -
Dere01g0868 646 Pfam DEAD/DEAH box helicase 149 332 IPR011545 GO:0003676|GO:0005524
Dere01g0868 646 SMART ultradead3 144 363 IPR014001 -
Dere01g0868 646 Gene3D - 352 604 IPR027417 -
Dere01g0868 646 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 125 153 IPR014014 GO:0003724
Dere01g0868 646 MobiDBLite consensus disorder prediction 527 574 - -
Dere01g0868 646 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 368 518 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0868 Dere-ChrDere01 17530608 17536542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0868 124 501 Eukaryotic Initiation Factors Gene Family AT3G19760 28.198 6.62e-40 149