LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere01g0842	ATGGAGCATGCCCTTCAAGCCGTCGTCGCCGCAGTCGCAAGCTTCTTCATCGTCACTCTCATCTTGGCGGCCCTAATCCTCGCCTGCAAATCCAACAACAAGCCGAATCCTCGTCAGCGCCAAACTCGTGCCCGGACCCAGCCGGAGCTATCCTCCATAACCGTCGACGCCAGCTGGTCCTTCGACCCCTACGTTCAGATCTCGATGGAGGAGATCACCAGAGCCACCAGGAACTTCTCGTCGGACCTGATCATCGGCGACGGCGGCTTCGGCCTCGTCTACAAGGCGCGTCTCTCTAACGGCCTCGTCGTCGCCATCAAGAAGCTCTCGCCGGACGCATTCCAAGGGTTTCGCGAATTCCGTGCCGAGATGGAAACCCTAGGTAAGCTCCGACACCCCAATATCGTCAAGATTCTCGGATATTGGGCTTCGGGTCCCGAGAGAATGTTGGTCTACGAGTTCATCGAGAAAGGCAATCTCGATCAATGGCTTCACGACCCCATGGCTTCTTCGTCTGGATACGACGACGTTTCCGCGGTGCGAGCGCCGTTGTCGTGGGAAAAGAGGGTGAAGATCATTAGGGGCGTAGCCAATGGGCTGTGCTACTTACATGGGCTGGAGAAGCCCATTATTCATAGGGACATAAAGTCCAGTAATGTGTTGTTGGACTCTGACTTCGAGGCCCATATTGCTGATTTTGGGCTTGCCAGGAGGATTGACACTCTGCACTCACACGTGTCCACTCAATTCGCGGGAACTATGGGGTACATGCCGCCGGAATATAAAGATGGGGTGAATGTGGCTAATGTGAAGGTGGATGTGTACAGTTTTGGGGTTTTGATGCTGGAGACTGCGACAGGCCAGCGGCCTAATCTTCCGGTCAAATTGGATAAAAAGGATATTGGGCTTGTGCAATGGGCCAGGAAAATGGTGGCCCAGAATGCCCAAATGGAAATGGTAGATTCCAATATCTCAAGGGAAGGGATAAGTGAAGATGATGTGAATGAGTACTTTAGGATTGCCTGTATGTGCACGAGTGAATTACAGAAACACAGGCCTGTAATGCCGCTGGTTGTGGAAATGTTGGAGAAAATGCCAATGTTTTTGCCGGAGTCTGGTACGTCGTGA	1128	0.5275	MEHALQAVVAAVASFFIVTLILAALILACKSNNKPNPRQRQTRARTQPELSSITVDASWSFDPYVQISMEEITRATRNFSSDLIIGDGGFGLVYKARLSNGLVVAIKKLSPDAFQGFREFRAEMETLGKLRHPNIVKILGYWASGPERMLVYEFIEKGNLDQWLHDPMASSSGYDDVSAVRAPLSWEKRVKIIRGVANGLCYLHGLEKPIIHRDIKSSNVLLDSDFEAHIADFGLARRIDTLHSHVSTQFAGTMGYMPPEYKDGVNVANVKVDVYSFGVLMLETATGQRPNLPVKLDKKDIGLVQWARKMVAQNAQMEMVDSNISREGISEDDVNEYFRIACMCTSELQKHRPVMPLVVEMLEKMPMFLPESGTS	375

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere01g0842	375	Pfam	Protein kinase domain	84	296	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere01g0842	375	ProSiteProfiles	Protein kinase domain profile.	79	368	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere01g0842	375	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	3	365	-	-
	Dere01g0842	375	FunFam	Phytosulfokine receptor 2	155	366	-	-
	Dere01g0842	375	Gene3D	Phosphorylase Kinase; domain 1	39	154	-	-
	Dere01g0842	375	SMART	serkin_6	79	368	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere01g0842	375	CDD	STKc_IRAK	85	365	-	-
	Dere01g0842	375	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	210	222	IPR008271	GO:0004672\|GO:0006468
	Dere01g0842	375	FunFam	Phytosulfokine receptor 2	41	154	-	-
	Dere01g0842	375	Gene3D	Transferase(Phosphotransferase) domain 1	155	368	-	-
	Dere01g0842	375	ProSitePatterns	Protein kinases ATP-binding region signature.	85	108	IPR017441	GO:0005524
	Dere01g0842	375	SUPERFAMILY	Protein kinase-like (PK-like)	59	365	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere01g0842	Dere-ChrDere01	16996796	16997923	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere01g0842	53	365	Receptor kinase-like Gene Family	AT5G07280	43.631	1.14e-74	249

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-Xb-1	Dere01g0842		Pkinase	3.7e-42	CL0016