Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0833 ATGTGCTTGCTAACGGTGGCGCACCAACGGGGGTCAGGCGAGTTTGCGAGGTTCACGTCCCATCACGGCGGCGCCGATGAGGAAGAAATATTGAGCCAACCGGCGGCGGCGGCTGTGGCGGCAGCGGAGGAGGACGAGGGGGCTGTGTTTGGGTATAGCAGAACAGGAGAGTTGACGGCGATGGTTTCGGCGCTGACGCATGTGGTGTCAGGCTCTAGCCAGAGAGGCACTGAACGGGTCCCCATGACGACAACTTTTGCGCAGGTTTCTTCTCCTCCTGCTTTGTCGCCTTACTTGTCCTCGTCTTCTTCTTCTTCTTCCTCTGGCTCTGTTTTCGGTTCTGCCTCTGCTTCCTGGGTTGGCCACAAAAGAGGACGTGAAGAACAGAGCTCTGTGCCACGAATCTATGGCGCTATTGATGACTTCAGAGCACCTTCTCAGGGAGAGTCATCTTCAGTGACAGAAGAAGCCACGAATATCTCCTACTCCACCGCCGCCTCCGCCGCCATGGTGACGGCGGAGACCGGTTCGCAGGAGGAAACCGGCGAGAGGAGGAGAAGATACAGAGGAGTGAGGCAGAGGCCATGGGGGAAATGGGCCGCTGAAATTCGCGATCCCCACAAAGCAGCGAGAGTGTGGCTCGGCACATTCGACACTGCCGAGGCTGCAGCCAGAGCCTACGACGAAGCCGCATTGAGATTCCGAGGTAACAGAGCGAAACTAAATTTCCCAGAAAACGTCAGAGTAGTGCCTCCGGCTCACAACTTTGTAACTGGCCTCGCCGTCTCGGATCCGCCGGCCACCCATTTGTCGCAGCAGCCGCCTCCTCTCCCGCATCCACCGTTCCTGCAGTCGCCGTCGCTTCAGGGATCGTCCAATTTGATCAGAGACTATTGGGAGTACTCTCAGTTACTACAGAGCTCCGGCGACTTCCATGGACAACAACAGCAACAACATTCGAATTTGTTGCAGCAATGGTTCTATAATTCTCAATTGGCTGCTCTTCAATCGTCTTCTCTGTTATTGTCATCTTCACCCCTGTCTTCTTCTTCTTCACCAACTGCATTTTCCCCTTCTAGTCAGTTATCCTCTGCTTCGTTTCCCCTGTTCTCTAGTCAGCAAGTGGGTAACTTCCGGCCACCGGGAAACGGATCACAGGGCAGTGGCCACGGCAGCTCAGATTTTCCGGCATCGACTTGGCCCGATACCGGCGGCTATCCTCCTCCATCTGGTTCTGGGTGA 1242 0.558 MCLLTVAHQRGSGEFARFTSHHGGADEEEILSQPAAAAVAAAEEDEGAVFGYSRTGELTAMVSALTHVVSGSSQRGTERVPMTTTFAQVSSPPALSPYLSSSSSSSSSGSVFGSASASWVGHKRGREEQSSVPRIYGAIDDFRAPSQGESSSVTEEATNISYSTAASAAMVTAETGSQEETGERRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGNRAKLNFPENVRVVPPAHNFVTGLAVSDPPATHLSQQPPPLPHPPFLQSPSLQGSSNLIRDYWEYSQLLQSSGDFHGQQQQQHSNLLQQWFYNSQLAALQSSSLLLSSSPLSSSSSPTAFSPSSQLSSASFPLFSSQQVGNFRPPGNGSQGSGHGSSDFPASTWPDTGGYPPPSGSG 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0833 413 Gene3D AP2/ERF domain 186 246 IPR036955 GO:0003700|GO:0006355
Dere01g0833 413 SMART rav1_2 187 250 IPR001471 GO:0003700|GO:0006355
Dere01g0833 413 PANTHER DNA-BINDING DOMAIN 150 330 IPR044808 GO:0003700|GO:0009873
Dere01g0833 413 MobiDBLite consensus disorder prediction 167 189 - -
Dere01g0833 413 MobiDBLite consensus disorder prediction 372 399 - -
Dere01g0833 413 MobiDBLite consensus disorder prediction 372 413 - -
Dere01g0833 413 FunFam Ethylene-responsive transcription factor 2 186 245 - -
Dere01g0833 413 MobiDBLite consensus disorder prediction 88 108 - -
Dere01g0833 413 MobiDBLite consensus disorder prediction 269 283 - -
Dere01g0833 413 ProSiteProfiles AP2/ERF domain profile. 187 244 IPR001471 GO:0003700|GO:0006355
Dere01g0833 413 MobiDBLite consensus disorder prediction 260 286 - -
Dere01g0833 413 Pfam AP2 domain 187 236 IPR001471 GO:0003700|GO:0006355
Dere01g0833 413 MobiDBLite consensus disorder prediction 115 134 - -
Dere01g0833 413 CDD AP2 195 246 IPR001471 GO:0003700|GO:0006355
Dere01g0833 413 PRINTS Ethylene responsive element binding protein signature 210 226 IPR001471 GO:0003700|GO:0006355
Dere01g0833 413 PRINTS Ethylene responsive element binding protein signature 188 199 IPR001471 GO:0003700|GO:0006355
Dere01g0833 413 SUPERFAMILY DNA-binding domain 187 245 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0833 Dere-ChrDere01 16814647 16816270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0833 178 251 AP2-EREBP Transcription Factor Family AT2G33710 77.027 8.22e-36 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere01g0833 AP2 8.1e-15 CL0081