Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0830 ATGAACAAAGATGGATTTGTATTTAAATTTTCAGATCTTGGAGGCCCGATCCGGATACCACTTCGGCGCAGAAGCAACCTCAGGAGGGGAAGGATGTCGCACAGGAAGTTCGAACACCCTAGGCACGGTTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGTGAAGGCATTCCCCAAGGATGATCCAAGCAAGCCACCCAAGCTTACTGCCTTCTTGGGTTACAAGGCAGGCATGACTCACATTGTTAGAGAGGTCGAGAAACCAGGATCAAAACTTCACAAGAAGGAAACTTGTGAACCCGTTACAATTATTGAGACCCCTCCAATGGTTATTGTTGGAGTTGTGGGTTATGTGAAAACTCCCCGTGGACTTCGAACATTGAACACTGTATGGGCTCAGCATTTGAGTGAGGATGTGAAGCGCAGATTCTATAAGAACTGGTGCAAGTCCAAGAAGAAAGCTTTCACGAAGTACTCCAAACAGTTTGAATCTGAAGAAGGGAAGAAAAACATTCAGGCTCAGCTTGAGAAAATTAAGAAGTATGCATCTGTTGTTCGGGTTTTGGCTCACACTCAGATTAGAAAAATGAAAGGGTTGAAGCAGAAGAAAGCACACCTCATGGAGATTCAGGTCAATGGTGGCACTATCGCACAGAAGGTGGATTTTGCATACAATTTCTTTGAGAAGCAGGTTCCCATTGATGCTGTATTCCAGAAGGATGAGATGATTGACCTTATTGGTGTGACAAAGGGTAAAGGGTATGAAGGTGTTGTCACTCGTTGGGGTGTTACCCGCCTTCCTCGCAAGACTCACAGGGGTCTGAGGAAGGTAGCTTGTATCGGTGCCTGGCATCCTGCCAGAGTTTCCTTCACAGTTGCCAGAGCTGGTCAAAATGGATACCATCACCGAACTGAGATGAACAAGAAGATTTACAAACTTGGCAAAGCTGGACAGGAGTCACACACAGCTGTTACGGAGTTTGATAGGACCGAGAAAGACATAACACCAATGGGTGGTTTTCCTCACTACGGTATTGTGAAAGATGACTTTGTGATGATCAAGGGATGCTGTGTTGGTCCCAAGAAGAGGGTTATTACATTGCGTCAATCCCTGCTTAAACAGACTTCTCGCCTTGCACTGGAGGAAATCAAGCTCAAGTTTATTGACACATCTTCCAAGTTTGGGCATGGCCGCTTCCAGACAACACAGGAGAAGCAAAAGTTCTTTGGACGTCTCAAGGCATAA 1263 0.4616 MNKDGFVFKFSDLGGPIRIPLRRRSNLRRGRMSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPPKLTAFLGYKAGMTHIVREVEKPGSKLHKKETCEPVTIIETPPMVIVGVVGYVKTPRGLRTLNTVWAQHLSEDVKRRFYKNWCKSKKKAFTKYSKQFESEEGKKNIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAQKVDFAYNFFEKQVPIDAVFQKDEMIDLIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKAGQESHTAVTEFDRTEKDITPMGGFPHYGIVKDDFVMIKGCCVGPKKRVITLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKQKFFGRLKA 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0830 420 Gene3D Translation factors 75 416 - -
Dere01g0830 420 FunFam 60S ribosomal protein L3 75 162 - -
Dere01g0830 420 SUPERFAMILY Translation proteins 35 401 IPR009000 -
Dere01g0830 420 FunFam 60S ribosomal protein L3 257 305 - -
Dere01g0830 420 ProSitePatterns Ribosomal protein L3 signature. 243 266 IPR019926 -
Dere01g0830 420 FunFam 60S ribosomal protein L3 32 105 - -
Dere01g0830 420 FunFam 60S ribosomal protein L3 114 238 - -
Dere01g0830 420 Gene3D Ribosomal protein L3, domain 3 32 305 IPR044892 -
Dere01g0830 420 FunFam Ribosomal protein L3 296 420 - -
Dere01g0830 420 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 32 415 IPR045077 GO:0003735|GO:0005840|GO:0006412
Dere01g0830 420 Gene3D - 114 238 - -
Dere01g0830 420 Pfam Ribosomal protein L3 32 401 IPR000597 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0830 Dere-ChrDere01 16744463 16747358 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0830 32 418 Cytoplasmic Ribosomal Protein Gene Family AT1G43170 86.822 0.0 700