Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0766 ATGGCCACTTCCCAGCATCGCTGCGTGTTTGTTGGGAATATACCGTATGATGCCACAGAGGAACAGCTTATTGAAATCTGCCAGGAGGTTGGGCCTGTTGTGTCATTCAGATTAGTTATTGATAGAGAAACTGGAAAACCAAAAGGTTATGGTTTCTGTGAGTATAAGGATGAAGAGACAGCTCTAAGTGCCCGCCGTAACCTTCAGGGCTATGAGATTAATGGGCGGCAACTTCGTGTTGATTTTGCTGAAAATGATAAAGGCGCTGATAGAAATAGAGAACAGGGGCGTGGTGGGCCTGGATTGGCTGCAAATGTTGACCCTCAGAAACAAGTAGGTGGGCCGGTTGTGCATGGGGAAGCTGTTCACCATCAACCTATAGGTCTTCATATTGCTATAACAGCTGCAACTGTCATGGCAGCAGCTCTAAGAGGTGCTCAATCTGGCATCCAGTCAAATCCAAATGGTTTGCAGAGTCAGTCAGGAATGGCACATGACCCTTTAACTCTGCATTTGGCCAAAATGTCCAGGAGTCAGCTGAATGAGATTATCTCTGAGCTCAAGGCAATGGCTACACAGAACAAGGAATTAGCTCGCCAATTGTTACTTTCTAGACCACAGTTGCCTAAGGCTCTGTTTCAGGCACAGATAATGCTGGGAATGGTGACCCCACAAGTGTTACAAATGCCGAACCTTAGGCAGGTTTCAGGTCAAACCTCACAGCCTACGGTGGACGAAGGCCAGCTAAGTCAGCCTGCAGTGCTTCAAAATCTATCTGGGCTATCCCCTCATGCGCAGATTAAGTTGCAGTCTGGCTTGTTGCCCAATATTCAAGAAGCTCAAGTCAACGCCATACGTCATAATTCTTTGGTTCCTAATCAATTAGTTGCACACCCAAAGCCTCCTTTGCAGCCTCGAATGCAGCTTCCTCAACATCCAAGCAACCCTGTTGTACAGCTGAGCACTTTGCCCGGGCATTCTAGTTTAACACTTCCTTCTGTGCGCCCTCAGTCTTTAGGCAATTTGTCTATCGGACCACCAATTCAGCTGCCAACTTCAACTTCTCTGAGCCAGCAAATGCACGCCCCTTTGCTACAACATTCAGGACAGGTTGGTAGCTCCAGTGTGGGACAAAATATTCGGATGGTTCGTCCAGATGCAAACTTTCAGCCTGGCCCGTCCATATCATCAGGTATTTCTCAGTCAGTTAGTAGGGAAGTTGACAGATCAGCTAAAGTTCTTGAGGATTCCAATTGGGCCAAGAAAAGTAGTACATATTCAAGCATTCCTCTGGGATCAGGAGAGAAATCAAATGCGGTTCATGAATCTTCAGAACCTTTTAGTCACCCTTCGAAGCTGATGAAATTGGATGAGGGAAGGAGTACTGCTTTCTCTGCGGGAGTTACAAATGTGCCTGTTTCCAAGGGATCATCCCAATTTCTTGGAAGTAGCTCATTGCCTGTAAATGCAACTCCTAAATCAGAAGGGCGAAACCCTGAGCAGCAATCCTCTCAGTCCCAGCTTCCTCCTGATGTGGAATCGATTTTACTGCAACAAGTGTTGAGTCTAACGCCAGAGCAATTGAGTTCTTTGCCACCAGAGCAGCAACAGCAGGTTATTCAACTCCAGCAGGCCCTCCGGCGCGACCAAATCCAGCCCTCATAA 1665 0.4721 MATSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGLAANVDPQKQVGGPVVHGEAVHHQPIGLHIAITAATVMAAALRGAQSGIQSNPNGLQSQSGMAHDPLTLHLAKMSRSQLNEIISELKAMATQNKELARQLLLSRPQLPKALFQAQIMLGMVTPQVLQMPNLRQVSGQTSQPTVDEGQLSQPAVLQNLSGLSPHAQIKLQSGLLPNIQEAQVNAIRHNSLVPNQLVAHPKPPLQPRMQLPQHPSNPVVQLSTLPGHSSLTLPSVRPQSLGNLSIGPPIQLPTSTSLSQQMHAPLLQHSGQVGSSSVGQNIRMVRPDANFQPGPSISSGISQSVSREVDRSAKVLEDSNWAKKSSTYSSIPLGSGEKSNAVHESSEPFSHPSKLMKLDEGRSTAFSAGVTNVPVSKGSSQFLGSSSLPVNATPKSEGRNPEQQSSQSQLPPDVESILLQQVLSLTPEQLSSLPPEQQQQVIQLQQALRRDQIQPS 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0766 554 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 3 550 - -
Dere01g0766 554 MobiDBLite consensus disorder prediction 424 453 - -
Dere01g0766 554 MobiDBLite consensus disorder prediction 475 511 - -
Dere01g0766 554 Pfam Transcription termination and cleavage factor C-terminal 516 548 IPR026896 GO:0031124
Dere01g0766 554 MobiDBLite consensus disorder prediction 390 405 - -
Dere01g0766 554 FunFam Related to Cleavage stimulation factor 507 549 - -
Dere01g0766 554 MobiDBLite consensus disorder prediction 424 445 - -
Dere01g0766 554 MobiDBLite consensus disorder prediction 384 405 - -
Dere01g0766 554 Pfam Hinge domain of cleavage stimulation factor subunit 2 158 228 IPR025742 -
Dere01g0766 554 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Dere01g0766 554 SMART rrm1_1 8 81 IPR000504 GO:0003723
Dere01g0766 554 SUPERFAMILY RNA-binding domain, RBD 4 101 IPR035979 GO:0003676
Dere01g0766 554 Coils Coil 180 200 - -
Dere01g0766 554 Gene3D - 1 114 IPR012677 -
Dere01g0766 554 Gene3D - 509 552 IPR038192 -
Dere01g0766 554 FunFam Cleavage stimulating factor 64 155 230 - -
Dere01g0766 554 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 79 IPR000504 GO:0003723
Dere01g0766 554 CDD RRM_CSTF2_RNA15_like 7 83 - -
Dere01g0766 554 Gene3D - 150 230 - -
Dere01g0766 554 FunFam Cleavage stimulating factor 64 1 116 - -
Dere01g0766 554 MobiDBLite consensus disorder prediction 82 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0766 Dere-ChrDere01 15432349 15440332 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0766 9 82 Eukaryotic Initiation Factors Gene Family AT2G23350 31.081 1.47e-07 52.4