Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Dere01g0714 | ATGCCGGAGATGACGATGACCGCTAACAATGGTAGCATTAGCAATGGCGTGAGCGGTCAATTCGGGGACACCACGCTGACCAAAGTGTTTGTGGGAGGATTGGCTTGGGAGACTCCCAAGGAGGTCATGAGAGAGCACTTTCAGAAGTACGGCGAGATCCTTGAGGCCGTCATTATCTCCGATAAGGCCACCGGCAGATCCAAGGGCTATGGCTTCGTGACGTTCAAGGAAGCTGAGGCGGCTAAGAAGGCTTGCGAGGATCCCACGCCGATCATCAATGGCCGTCGAGCCAACTGCAATCTGGCTTCGCTCGGCGCGCGCCGCCCTAGGTCCACCAACACTTCACCTCCTCGTCAACAAGGATCGAACGGCGGAGGACCAAGGAACGCCTCAAGTGCACCTCCCCCGCCAGCCAATCACGTCCAGTGGTATTATCCGGTGGGGACACCTGCTTCTCATTTCCATCATCACCACCATCAGGCCGTTCCTTTATATGGGTACACCCCAACCTACATTGCAACGGACCCGAATTACAATCAGAAGCTAGGCTACACCGGTGGTGGGCCCTACATGAACGGTTACTACTCTCCTGTGTATCCGAGCCAGGCTATGGTGGGTGGGAACACATTGATGCCGATGTACCCTCTTTACCAGTATCATCAAACGCACACCATGGGCCTACCTGCCCACATCTTCCAGCCAACCACGCCGCGGCACGTGGCCATCATGTCGAAGCCCGCGTCCATCACTCCCAACTCAGGTGCGTCACATGGTAACATGCCCAACCAACCCCAGTCAATGTCTGTAAGCAACAACACGAATCATTGTGGTCACGTGACCTTGATATCGTGA | 852 | 0.5552 | MPEMTMTANNGSISNGVSGQFGDTTLTKVFVGGLAWETPKEVMREHFQKYGEILEAVIISDKATGRSKGYGFVTFKEAEAAKKACEDPTPIINGRRANCNLASLGARRPRSTNTSPPRQQGSNGGGPRNASSAPPPPANHVQWYYPVGTPASHFHHHHHQAVPLYGYTPTYIATDPNYNQKLGYTGGGPYMNGYYSPVYPSQAMVGGNTLMPMYPLYQYHQTHTMGLPAHIFQPTTPRHVAIMSKPASITPNSGASHGNMPNQPQSMSVSNNTNHCGHVTLIS | 283 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Dere01g0714 | 283 | PANTHER | BOULE-RELATED | 13 | 266 | - | - | |
Dere01g0714 | 283 | Gene3D | - | 22 | 133 | IPR012677 | - | |
Dere01g0714 | 283 | FunFam | Putative RNA-binding protein ARP1 | 21 | 110 | - | - | |
Dere01g0714 | 283 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 29 | 86 | IPR000504 | GO:0003723 | |
Dere01g0714 | 283 | CDD | RRM_RBM24_RBM38_like | 27 | 102 | - | - | |
Dere01g0714 | 283 | MobiDBLite | consensus disorder prediction | 105 | 129 | - | - | |
Dere01g0714 | 283 | MobiDBLite | consensus disorder prediction | 250 | 273 | - | - | |
Dere01g0714 | 283 | MobiDBLite | consensus disorder prediction | 104 | 141 | - | - | |
Dere01g0714 | 283 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 27 | 104 | IPR000504 | GO:0003723 | |
Dere01g0714 | 283 | SMART | rrm1_1 | 28 | 100 | IPR000504 | GO:0003723 | |
Dere01g0714 | 283 | SUPERFAMILY | RNA-binding domain, RBD | 23 | 129 | IPR035979 | GO:0003676 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Dere01g0714 | Dere-ChrDere01 | 14459435 | 14461980 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Dere01g0714 | 7 | 178 | C2H2 Transcription Factor Family | AT2G19380 | 30.645 | 1.85e-17 | 80.5 |