Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0710 ATGGAGCAGGATGATCGGCATCAACACGAAGAGCATGAAGTGTACGGAGGAGAGATCCCCGACGAGGGGGAGATGGACGCAGATTTTAGGGTTGAAGAAGAAGAAGGGGATGAGCGCCATGGCTCCAATCACCCGAACAAGGACTTGGAGGACATGAAGAAGAGGCTCAAGGAGATTGAGGAAGAAGCTGGCGGCCTTCGTGAAATGCAGGCTAAGGTTGAGAATGAGATGGGTGCTGTTCAAGATTCATCTAGTGCTTCTGCAAGCCAAGCTGAAAAGGAGGAAGTGGATTCTCGATCAATCTATGTTGGAAATGTTGACTATACTTGTACACCTGAAGAAGTCCAACAGCATTTTCAGTCTTGTGGAACTGTGAACAGAGTGACCATATTGACAGACAAGTTTGGTCAGCCGAAAGGATTTGCTTATGTTGAGTTTGTTGAGATTGATGCTGTTCAGAATGCGCTCCTGTTGAATGAATCAGAATTGCATGGTCGACAATTGAAGGTCTCTGCCAAGCGTACAAACATTCCTGGAATGAAACAGTTCCGTGGAAGGAGGCCTATGGGTTTAAGATCTAGAAGGCCCTTCTTGCCTGCTCCATTCTATCCTGCATACGGTTATGGAAGGGTTCCAAGGTTTAGGCGACCCACTCGGTACAGGCCATACTAG 672 0.4747 MEQDDRHQHEEHEVYGGEIPDEGEMDADFRVEEEEGDERHGSNHPNKDLEDMKKRLKEIEEEAGGLREMQAKVENEMGAVQDSSSASASQAEKEEVDSRSIYVGNVDYTCTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNESELHGRQLKVSAKRTNIPGMKQFRGRRPMGLRSRRPFLPAPFYPAYGYGRVPRFRRPTRYRPY 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0710 223 SMART rrm1_1 100 171 IPR000504 GO:0003723
Dere01g0710 223 CDD RRM_II_PABPs 100 171 - -
Dere01g0710 223 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 22 193 - -
Dere01g0710 223 MobiDBLite consensus disorder prediction 1 97 - -
Dere01g0710 223 MobiDBLite consensus disorder prediction 33 69 - -
Dere01g0710 223 MobiDBLite consensus disorder prediction 77 91 - -
Dere01g0710 223 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 101 169 IPR000504 GO:0003723
Dere01g0710 223 Coils Coil 49 76 - -
Dere01g0710 223 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 99 175 IPR000504 GO:0003723
Dere01g0710 223 Gene3D - 20 179 IPR012677 -
Dere01g0710 223 SUPERFAMILY RNA-binding domain, RBD 87 196 IPR035979 GO:0003676
Dere01g0710 223 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0710 Dere-ChrDere01 14363484 14372256 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0710 100 171 Eukaryotic Initiation Factors Gene Family AT2G36660 36.842 2.70e-09 54.7