Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0709 ATGGAGCAGCAACACGAAGAGCATGAAGTGTACGGAGCAGATATTCCCGACGAGGGGGAGATGGACGCAGATTTTGGAGTTGAAGAAGAAGAAGAAGAAGACCAGCATAACTCCAATCCCCCAAATAAGGACTTGGAGGACATGAAGAAGAGGCTCAAGGAGATTGAGGAAGAAGCCAGCGCCCTTCGCGAAATGCAGGCTAAGGTTGAGAAAGAGATGGGTGTTGTTCAAGATTCATCTGGTTCTTCTGCAAGTCAAGCTGAAAAGGAGGAAGTGGATTCCCGATCAATCTATGTTGGTAATGTTGACTATGCTTGTACACCTGAAGAAGTCCAACAGCATTTTCAGTCCTGTGGAACTGTGAACAGAGTGACGATATTGACAGACAAATTTGGTCAACCAAAAGGATTTGCTTATGTTGAGTTTGTCGAGGTTGATGCTGTTCAGAATGCTCTTCTGTTGAATGAATCAGAATTGCATGGTCGACAATTGAAGGTCTCTGCTAAGCGAACAAACATTCCTGGAATGAAACAGTATCGTGGAAGAAGACCAATGGGTTTGCGTCCTAGAATGCCTTTCATGCCTTCTCCGTTCTATCCTCCATATGGTTATGGGAGGTTTCCAAGGTATAGGCGACCCACACGGTACAGGCCATACTAG 660 0.4545 MEQQHEEHEVYGADIPDEGEMDADFGVEEEEEEDQHNSNPPNKDLEDMKKRLKEIEEEASALREMQAKVEKEMGVVQDSSGSSASQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNIPGMKQYRGRRPMGLRPRMPFMPSPFYPPYGYGRFPRYRRPTRYRPY 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0709 219 MobiDBLite consensus disorder prediction 1 15 - -
Dere01g0709 219 MobiDBLite consensus disorder prediction 1 93 - -
Dere01g0709 219 FunFam Polyadenylate-binding protein 1 89 175 - -
Dere01g0709 219 SUPERFAMILY RNA-binding domain, RBD 85 193 IPR035979 GO:0003676
Dere01g0709 219 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 165 IPR000504 GO:0003723
Dere01g0709 219 SMART rrm1_1 96 167 IPR000504 GO:0003723
Dere01g0709 219 MobiDBLite consensus disorder prediction 36 71 - -
Dere01g0709 219 Gene3D - 18 177 IPR012677 -
Dere01g0709 219 CDD RRM_II_PABPs 96 167 - -
Dere01g0709 219 Coils Coil 42 72 - -
Dere01g0709 219 MobiDBLite consensus disorder prediction 16 35 - -
Dere01g0709 219 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 26 207 - -
Dere01g0709 219 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 171 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0709 Dere-ChrDere01 14346426 14358074 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0709 96 167 Eukaryotic Initiation Factors Gene Family AT2G36660 36.842 8.00e-10 56.2