Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere01g0701 | ATGGTAGGATACCAAGATACCCTTTTGGACGACAGTGGCAAGCACTTCTTCAAAGACTGCACTATTCGAGGCACAGTAGATTTCATATTCGGGGATGGAAAATCAATCTATTTGCACAAGAACAGTGAAGTAGGTGCAATTGGCAAAGGACGTGCTAGTTTCACCAAGTGGCTAAGTGATTCTGAGGCTTACCCTTTCATCAACCTTGGCTACATTGAGGATTCCTAG | 228 | 0.4386 | MVGYQDTLLDDSGKHFFKDCTIRGTVDFIFGDGKSIYLHKNSEVGAIGKGRASFTKWLSDSEAYPFINLGYIEDS | 75 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere01g0701 | 75 | Pfam | Pectinesterase | 1 | 37 | IPR000070 | GO:0030599|GO:0042545 | |
| Dere01g0701 | 75 | ProSitePatterns | Pectinesterase signature 2. | 22 | 31 | IPR033131 | - | |
| Dere01g0701 | 75 | Gene3D | - | 1 | 69 | IPR012334 | - | |
| Dere01g0701 | 75 | PANTHER | ACYL-COA THIOESTER HYDROLASE YBHC-RELATED | 2 | 40 | - | - | |
| Dere01g0701 | 75 | SUPERFAMILY | Pectin lyase-like | 2 | 38 | IPR011050 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere01g0701 | Dere-ChrDere01 | 14248414 | 14250089 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere01g0701 | 3 | 50 | Carbohydrate Esterase | AT5G07430 | 62.500 | 1.08e-15 | 67.8 |