Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0693 ATGGGGCCGTCTAATTCATTTGGGAGAAGTCAATGTCAAGGGTCCTGTCGTCCTCCAGACATTCATGATACCAAAGTGGGTGATGACTTGTGTTCAAGGAAACTCAAAAGATCTGCTTTAAATCCAGCGTGGGAAGAAGAACGTCAAACTCAAGATTTGAGGGTAAATGTGAATCGTCATAAGGTGGAGAAACTATTGAATATTTATAGGGAATTATCTTCCAAACTTCTGCATGAGTATGAGGCAGAGGATCAAGGGAACCTGATCAATGCAAGGAGAAAAGTGTGGATAGATGCAGCAATGTATCTTAAGAAGCAACATAAATGGGTTAACACTAACAAACAACTAGGGCCGATTCTAGGAATTGAAGTTGGTGACCAGTTTCAGTGCAGGGCTGAACTGAACATAATTGGTCTTCATTGTCAATTTGAAAGTGGTATTGATTACATGAAGAAGGATGAAGTATTGTTGGCCACAAGCATTGTAGCTTCTAGTCGCTATGCTAATGTTAGAGAGTCAAGTAATTCCTTGATTTACATAGGCCACGGTGGAAATCCAAGGGTTAAGAGTGTGAAGCCAACAGATCAGAAACTGAAACTGGGAAATCTTGCTATGATGAATAGTATGAAAGCTAAGACTCCTGTAAGAGTTGTTTTGAAGGTTAGTTGTTCTAACTTCTCTTATATTTATGATGGATTGTACATAGTGGAGAAGATGACACAAGTGAGAGGAGAATTTGGAAAACTTGTATTCAGATTTTTCTTGACTAAAATTTCAGAACAGCCTTCAAGCTTTGTTAGACTGACGCAGATGGTTAATAAACCAAAAAGTTCTGTAATTTCCCAGAGAGAGGTGGTTTGTGTAAATGACATTTCACAAGGACAAGAGAAGTTTCCTATTCGTGTGGTTGCTTCTATTCATGGTGATTTGAAGCCTACCCCATTTGATTACATAGTCAATAATGTTTTTAAAGGGAGGTATTATATGCATCATGTGGCTATGTCTCATGGTTGTGATTGCACAGATGGATGCATAAACAATGATAAATGTGCATGTGCCATGAAAAATGGTGGAAGGATGCCATATAACTATAGTAGGAAGCTCATTGCTCAAACAAGATCTCTCATTTGTGAGTGTGGTCCTTCTTGCAAGTGCGACTCTTCTTGCATCAATAGGGTAACTCAGTTTGGGATTCAATTTAAACTTGAAATCTTCAAAACTGATTTGAAGGGCTGGGGTGTTAGAACACGTTCTTTTATTCCTGCTGGAAGTTTTGTTTGTGAGTATGTTGGAGAAGTTTGTGTTGATATAGAAGCCAAGGCGAGGCCGGATGTTGAAGATTGTTTGTTTGAAATAGATGTGCGCAAGGCATACATTGATGCAACTAAACGTGGAAACGTTGGGAGATTTATAAATCATAGCTGTGCTCCTAATCTCTGTGTTAAAGATGTTTTATACGACCATGATGATAAGAGATCCCCCCACAAAATGCTGTTTGCTTTGAAAAACATACCTGCTGGACGAGAATTGTGCTATGACTATAATTGCAGGAAGGCAAAGTCTAATGAAGGTATTAATAGTAAGGTTAAAACTAGGTCCAGCCTAATTCGTGTGCACTCTTATGTTGTAGTATTCAATACAATGTTATATGAGTAA 1656 0.3847 MGPSNSFGRSQCQGSCRPPDIHDTKVGDDLCSRKLKRSALNPAWEEERQTQDLRVNVNRHKVEKLLNIYRELSSKLLHEYEAEDQGNLINARRKVWIDAAMYLKKQHKWVNTNKQLGPILGIEVGDQFQCRAELNIIGLHCQFESGIDYMKKDEVLLATSIVASSRYANVRESSNSLIYIGHGGNPRVKSVKPTDQKLKLGNLAMMNSMKAKTPVRVVLKVSCSNFSYIYDGLYIVEKMTQVRGEFGKLVFRFFLTKISEQPSSFVRLTQMVNKPKSSVISQREVVCVNDISQGQEKFPIRVVASIHGDLKPTPFDYIVNNVFKGRYYMHHVAMSHGCDCTDGCINNDKCACAMKNGGRMPYNYSRKLIAQTRSLICECGPSCKCDSSCINRVTQFGIQFKLEIFKTDLKGWGVRTRSFIPAGSFVCEYVGEVCVDIEAKARPDVEDCLFEIDVRKAYIDATKRGNVGRFINHSCAPNLCVKDVLYDHDDKRSPHKMLFALKNIPAGRELCYDYNCRKAKSNEGINSKVKTRSSLIRVHSYVVVFNTMLYE 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0693 551 Gene3D SET domain 266 525 IPR046341 -
Dere01g0693 551 Pfam Pre-SET motif 291 392 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Dere01g0693 551 MobiDBLite consensus disorder prediction 1 20 - -
Dere01g0693 551 SMART preset_2 288 384 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Dere01g0693 551 SUPERFAMILY PUA domain-like 99 267 IPR015947 -
Dere01g0693 551 ProSiteProfiles SET domain profile. 400 515 IPR001214 GO:0005515
Dere01g0693 551 ProSiteProfiles Pre-SET domain profile. 336 397 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Dere01g0693 551 Pfam SAD/SRA domain 116 261 IPR003105 -
Dere01g0693 551 Pfam SET domain 411 515 IPR001214 GO:0005515
Dere01g0693 551 SMART G9a_1 112 261 IPR003105 -
Dere01g0693 551 SUPERFAMILY SET domain 280 516 IPR046341 -
Dere01g0693 551 SMART set_7 400 521 IPR001214 GO:0005515
Dere01g0693 551 ProSiteProfiles YDG domain profile. 117 257 IPR003105 -
Dere01g0693 551 Gene3D - 115 265 IPR036987 -
Dere01g0693 551 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 18 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0693 Dere-ChrDere01 14152810 14156150 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0693 99 514 Su(var)3-9 homologs AT1G73100 35.088 1.04e-74 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Dere01g0693 SAD_SRA 2.9e-37 CL0178