Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0689 ATGGCTGTGTCTCCTTTCTTCTTGTTTGTGGCTCTCTCTCTCCATGCTCTTTCTGCTAGTGCCATTGATGGTTCTTGGTATGATGCTCACGCAACCTTCTATGGCGACATGAGTGGCAGAGAAACCATGCAGGGAGCTTGTGGCTATGGCGACCTATTCAAGCAAGGCTATGGCCTGCAAACAACAGCTCTGAGCACAGCTCTCTTCAACAACGGCCTCACATGCGGGGCATGCTTCGAGATCACGTGCGTCAACGACGCTCAATGGTGCATCAAGGGTGCCGGAAGCATTACCGTGACGGCCACCAATTTCTGCCCTCCGAACTACTCCAAGCCTGACATCAACCATTGGTGCAACCCTCCATTGAAGCACTTCGACCTCTCCATGCCCATGTTCACCAAGATCGCCTACTACAAGGCCGGCATCATCCCGGTCCGGTACCGCCGCGTCCCGTGCTCCAAGTCCGGCGGGGTCAAGTTCGAGCTCAACGGCAACCCTTGGTTTCTCCTCGTCCTGTTCTACAACGTCGGCAACGCCGGCGACGTGACGAACGCGAAGATCAGAGGGAACAACGGTGGGTGGATTCAGATGAGTCGGAACTGGGGACAGAATTGGCAGACAGGGACGAATTTGGTAGGGCAAAGCTTGTCTTTTCAGGTCACTACGAGTGATGGGAAAACGATGGAGTTTGATAACGTTGTGCCTTCTAATTGGCAGTTTGGTCAGAATTTTGAGGGCCAAAAGAACTTCTAG 753 0.5339 MAVSPFFLFVALSLHALSASAIDGSWYDAHATFYGDMSGRETMQGACGYGDLFKQGYGLQTTALSTALFNNGLTCGACFEITCVNDAQWCIKGAGSITVTATNFCPPNYSKPDINHWCNPPLKHFDLSMPMFTKIAYYKAGIIPVRYRRVPCSKSGGVKFELNGNPWFLLVLFYNVGNAGDVTNAKIRGNNGGWIQMSRNWGQNWQTGTNLVGQSLSFQVTTSDGKTMEFDNVVPSNWQFGQNFEGQKNF 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0689 250 PRINTS Expansin signature 56 70 IPR002963 GO:0009664
Dere01g0689 250 PRINTS Expansin signature 115 132 IPR002963 GO:0009664
Dere01g0689 250 PRINTS Expansin signature 203 224 IPR002963 GO:0009664
Dere01g0689 250 PRINTS Expansin signature 168 189 IPR002963 GO:0009664
Dere01g0689 250 PRINTS Expansin signature 97 107 IPR002963 GO:0009664
Dere01g0689 250 PRINTS Expansin signature 156 168 IPR002963 GO:0009664
Dere01g0689 250 PRINTS Expansin signature 83 94 IPR002963 GO:0009664
Dere01g0689 250 PRINTS Expansin signature 132 145 IPR002963 GO:0009664
Dere01g0689 250 PRINTS Expansin signature 232 248 IPR002963 GO:0009664
Dere01g0689 250 PANTHER EXPANSIN-A15 8 249 IPR002963 GO:0009664
Dere01g0689 250 PRINTS Expansin/Lol pI family signature 140 156 IPR007118 GO:0005576
Dere01g0689 250 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576
Dere01g0689 250 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Dere01g0689 250 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576
Dere01g0689 250 PRINTS Expansin/Lol pI family signature 194 208 IPR007118 GO:0005576
Dere01g0689 250 PRINTS Expansin/Lol pI family signature 232 246 IPR007118 GO:0005576
Dere01g0689 250 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 167 246 IPR007117 -
Dere01g0689 250 Gene3D - 11 153 IPR036908 -
Dere01g0689 250 SUPERFAMILY Barwin-like endoglucanases 25 175 IPR036908 -
Dere01g0689 250 Pfam Expansin C-terminal domain 158 235 IPR007117 -
Dere01g0689 250 SMART dpbb_1 61 147 IPR007112 -
Dere01g0689 250 CDD DPBB_EXPA_N 26 152 - -
Dere01g0689 250 Gene3D - 156 250 IPR036749 -
Dere01g0689 250 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 157 IPR007112 -
Dere01g0689 250 SUPERFAMILY PHL pollen allergen 154 245 IPR036749 -
Dere01g0689 250 Pfam Lytic transglycolase 61 147 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0689 Dere-ChrDere01 14073711 14075042 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0689 16 250 Expansin Gene Family AT5G39280 65.106 5.24e-119 339