Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0688 ATGGGTTCTGTTTGTGGTTGTTTGAGTGTTGACAATATTGAAGATTATGTAAATCCAAATAGTTCTGTATATAGGAATTGCATGTGTCTCAGTTGCTTCATACATAACTTTTTGAATGTGTATACATCAATATTCCGCAGGCGCGAAGTGCATTCCATTACTTCATCTATCCAGGGGGCAGCATCTATGACTTCTACAGCATCACTGGATAATTCCTTATCTGACATGTATCGTTCTCCTCCACGGCCCCTTCCATATGATGCTGACCCTAGGTATTTCCTCTCACAGCGTGATGGACTAGTTTCAAGACGTGAGAAAGGTTCAAGTCATTCTAATGAGGAATCACAACCTCTAAGAAGTGATCTAGATGTGGATTCAGAATCTTTAAATATGGGAGACAAATGGAATGAATGTGCCTGTGAAAATGGATCAAAGGAATACCGTTCTAAGTCCTCACTAAGACTCTCATCAGCAAAATATGCAAATGGAGTTGGGCTGGTCTATCCATCATCAGAAGATGAGGATAATTGTCCAACATGTCTTGAAGAATATACTCAAGAGAACCCAAAGATAATGACCAAGTGCTCTCACCATTTTCATCTTGGTTGCATCTATGAGTGGATGGAGAGAAGTGAAAACTGTCCAGTCTGTGGGAAGGAGATGGAATTCGATGAAACGACTTAA 684 0.402 MGSVCGCLSVDNIEDYVNPNSSVYRNCMCLSCFIHNFLNVYTSIFRRREVHSITSSIQGAASMTSTASLDNSLSDMYRSPPRPLPYDADPRYFLSQRDGLVSRREKGSSHSNEESQPLRSDLDVDSESLNMGDKWNECACENGSKEYRSKSSLRLSSAKYANGVGLVYPSSEDEDNCPTCLEEYTQENPKIMTKCSHHFHLGCIYEWMERSENCPVCGKEMEFDETT 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0688 227 CDD RING-H2_AIRP1-like 173 221 - -
Dere01g0688 227 Pfam RING-H2 zinc finger domain 174 217 IPR024766 GO:0008270
Dere01g0688 227 SMART ring_2 177 217 IPR001841 -
Dere01g0688 227 SUPERFAMILY RING/U-box 172 223 - -
Dere01g0688 227 ProSiteProfiles Zinc finger RING-type profile. 177 217 IPR001841 -
Dere01g0688 227 MobiDBLite consensus disorder prediction 103 126 - -
Dere01g0688 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 226 IPR013083 -
Dere01g0688 227 FunFam E3 ubiquitin-protein ligase At3g02290-like 154 224 - -
Dere01g0688 227 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 54 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0688 Dere-ChrDere01 14057068 14062740 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0688 1 226 C3H Transcription Factor Family AT5G15790 60.606 2.00e-92 269