Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0680 ATGGCTAGGTCTGCGAAAGGTCAGCAAGAAGAATTGGAAGACGGCGATGAGGATCACTTGACTGGAAATGGCTCTTCTTCACACAAAGTGAAGATGGATGAAGCGACCAGAGAGCAGCGGGTGAACGCACATCGTTCAAAGCATTCAGAAACTGAGCAGCGTAGAAGGAGCAAGATTAATGAAAGATTTCAGATTCTGCGAGAACTCATACCTCAAAATGATCAAAAAAGAGATAAGGCTTCTTTCTTGTTGGAGGTTATTGAGTATATTCAATTTTTACAAGAGAAACTACTAATGTATGAGCAATCATACCAAGGGTGGAATCAGGAGCCAACGAAATTAATTCCTTGGAGAAATCATCGTGGGCCTGCAGAAAATGTCACACATCCTTCTCAGGCTATAGAAAATGGTTCTGGTCATGAGAACAATGATGTTGTCTCTCCATCACTGCCCATAAATGCACAGAATGCAATTGAATCAGACTTGTCATCAACAATTCTTCAGAAGGCCAGTCCCCCTGGTTTAGCCTCTGAAGTAGTTCCCTTGGGCATGCAAATGCGTTTGGACATGTTTGACCCAACCGTGAGCAGTGGTATGCCAACCCAACATTTGCATGAAGCTGTACCTAACGCTGAGAACATGCCTTCCCATACTCCTCCTCAGGTGTGTCTTGGTAGACCTAAGGGGGGCGCTTGTGATTTTCCAAATAATACATTGAAGGAACAGGAGGAGATGACATTTGAAAGTGGATTGGCTAGCATCTCAAGTGCCTACTCTCAGGGAGTACTGGATACTTTAATGCAAGCGCTGCTGTCTTCTGGTGTAGATTTATCCCAGGCCAATGCTTCAGTGCAAATTGATGTTGGAAGACGTTCAATTGCCTCCACATCTAACTCAAAGGATCATGAGAGCCAAGTTGTGAACCAAGTGATGCCATGTTCAGGAGTTGATTACTGCAGTGAGGATTCTGAACACGCTCTTAAGCGGCTCAGAACTGAAGCGAGTTAG 1008 0.4444 MARSAKGQQEELEDGDEDHLTGNGSSSHKVKMDEATREQRVNAHRSKHSETEQRRRSKINERFQILRELIPQNDQKRDKASFLLEVIEYIQFLQEKLLMYEQSYQGWNQEPTKLIPWRNHRGPAENVTHPSQAIENGSGHENNDVVSPSLPINAQNAIESDLSSTILQKASPPGLASEVVPLGMQMRLDMFDPTVSSGMPTQHLHEAVPNAENMPSHTPPQVCLGRPKGGACDFPNNTLKEQEEMTFESGLASISSAYSQGVLDTLMQALLSSGVDLSQANASVQIDVGRRSIASTSNSKDHESQVVNQVMPCSGVDYCSEDSEHALKRLRTEAS 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0680 335 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 2 332 IPR044295 GO:0003700|GO:0006351|GO:0046983
Dere01g0680 335 Pfam Helix-loop-helix DNA-binding domain 45 94 IPR011598 GO:0046983
Dere01g0680 335 Gene3D - 41 114 IPR036638 GO:0046983
Dere01g0680 335 Coils Coil 90 110 - -
Dere01g0680 335 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 43 93 IPR011598 GO:0046983
Dere01g0680 335 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 44 120 IPR036638 GO:0046983
Dere01g0680 335 CDD bHLH_AtBIM_like 42 118 - -
Dere01g0680 335 SMART finulus 49 99 IPR011598 GO:0046983
Dere01g0680 335 MobiDBLite consensus disorder prediction 1 56 - -
Dere01g0680 335 FunFam BHLH domain class transcription factor 41 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0680 Dere-ChrDere01 13966350 13974033 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0680 3 292 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 42.715 4.16e-60 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere01g0680 HLH 1.8e-15 No_clan