Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0677 ATGCAAAGGCCTGGATTATTTCATTGTGTGAATGCCAAGAGAGAACAAATAATGGTTCGTCAAGCTGATTTAGTTATCATTGGTGTCTCTGTTGGTTTGGCCTTTGGAATTTTGATAGCTTCTCTCATATTTCTCGTCATAAGGTGGTACAAGAAACATGTTCATCTTAGACGATGTACTAATGAGCGCACTTTAACGACTCTTCCAATACGCACAAATGGATTTGGAACAAGCACTGATTTCAGTGCTTCTCTCACGAGTTCCATAGCTGTTTCAAGGTCTGAAAATCTGCAGAAAAACTCTTATATCTCTTGGTGGAATCAACAAAAAAAAGATCAGTTTGCATCGGCATCAGGCATCCCTAGATACTCATACAAAGAAATTCAAAAGGCCACGCAAAATTTCACAACTATCTTGGGACAGGGATCATTTGGCACAGTTCATCAAGCAACACTGCCTACAGGTGAGGTGGTAGCTGTGAAGGTGCTTGGTTCCAATTCCAAACAAGGGGAGAAAGAATTCCAAACAGAGGTACTTTTGCTAGGAAGACTTCATCATCGGAATCTAGTGAATTTGTTAGGATATTGTGTAGATAAAGGACAACGTATTCTGATTTATGAGTTCATGAGTAACGGAAGCTTAGAAAAGCTTATACATGGTGAAGAAAAGGTTTTAAGCTGGGATGAAAGGCTGCAAATTTCTGTTGATATCTCACATGGAATTGAATACCTTCATGAAGGAGCAGTCCCACCTGTCATACACCGTGATTTGAAATCTGCCAATATATTGTTAGATCACTCAATGCGAGCTAAGGTTGCTGATTTTGGGCTCTCGAAGGAGGAGATTTTTGATGGGCGAAATTCTGGCCTAAAAGGTACATATGGGTACATGGATCCATCATACATTTCCACTAACAAGTTTACAATGAAGAGTGACATTTACAGTTTCGGTATCGTCATTTTTGAGCTCATCACTGCAATCCACCCTCATCAAAATTTGATGGAATACGTTAACCTTGCTGCAATGGATCATGATGGTGTAGATGGAATACTTGACAAGAAACTAGTGGGAAAATGCAACATTGCAGAAGTGAGGCAGCTTGCTAAAATAGGATACAAATGCTTGCACAAATCACCTAGGAGACGTCCTTCAATTGGTGAGGTTTCACAGGCTATATTGAGCATAAAACATAGGCGCCTAGCAAAAGAAAACACAATGTCACTTGCAGGCACTAGCTTTTCCAGAGCTTTAAGTAGAATCGAGGATCAGCAGGTTGAGTTAAGTAGGATAACCACCATGGCATGA 1305 0.4023 MQRPGLFHCVNAKREQIMVRQADLVIIGVSVGLAFGILIASLIFLVIRWYKKHVHLRRCTNERTLTTLPIRTNGFGTSTDFSASLTSSIAVSRSENLQKNSYISWWNQQKKDQFASASGIPRYSYKEIQKATQNFTTILGQGSFGTVHQATLPTGEVVAVKVLGSNSKQGEKEFQTEVLLLGRLHHRNLVNLLGYCVDKGQRILIYEFMSNGSLEKLIHGEEKVLSWDERLQISVDISHGIEYLHEGAVPPVIHRDLKSANILLDHSMRAKVADFGLSKEEIFDGRNSGLKGTYGYMDPSYISTNKFTMKSDIYSFGIVIFELITAIHPHQNLMEYVNLAAMDHDGVDGILDKKLVGKCNIAEVRQLAKIGYKCLHKSPRRRPSIGEVSQAILSIKHRRLAKENTMSLAGTSFSRALSRIEDQQVELSRITTMA 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0677 434 ProSitePatterns Serine/Threonine protein kinases active-site signature. 252 264 IPR008271 GO:0004672|GO:0006468
Dere01g0677 434 CDD STKc_IRAK 139 390 - -
Dere01g0677 434 FunFam Calcium/calmodulin-regulated receptor-like kinase 1 106 208 - -
Dere01g0677 434 SUPERFAMILY Protein kinase-like (PK-like) 103 390 IPR011009 -
Dere01g0677 434 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 24 401 - -
Dere01g0677 434 SMART serkin_6 133 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g0677 434 ProSiteProfiles Protein kinase domain profile. 133 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g0677 434 Gene3D Phosphorylase Kinase; domain 1 105 208 - -
Dere01g0677 434 Pfam Protein tyrosine and serine/threonine kinase 135 390 IPR001245 GO:0004672|GO:0006468
Dere01g0677 434 FunFam Calcium/calmodulin-regulated receptor-like kinase 2 209 416 - -
Dere01g0677 434 Gene3D Transferase(Phosphotransferase) domain 1 209 414 - -
Dere01g0677 434 ProSitePatterns Protein kinases ATP-binding region signature. 139 161 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0677 Dere-ChrDere01 13921343 13926400 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0677 119 388 Receptor kinase-like Gene Family AT3G19300 41.219 6.91e-69 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Dere01g0677 PK_Tyr_Ser-Thr 3.2e-49 CL0016