Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0642 ATGCTACGATTTACAGAGTCCATAGCTTTCCCAATTCAAGGCATGGAGTCTGTGGTGGCTACAGTGAGTGGTTACCATGGCTTAGAGCGATTCAACCTCATTAAGTTGATCTCACATGCTGGTGCAAATTATGTTGGCGCAATGTCAAAATCAATCACGCACCTGATTTGTTGGAAATTTCAAGGAAAGAAATATAATCTTGCACGGAAGTTCAAAATAGTTATAGTAAACCACCAATGGGTTGAAGACTGCATAAAGCAAGGAAGGCGTGTTCCAGAGGAATCTTATATAGTGAAAAGTGGACAAGAAGTGGGGCCAATATTGCTGCAAGCCCCACATGTTAAGAATAAAGTGCTTGGTCATAGATCAGATGACATTGGCTCTAAAAACCAAACAACTGAATTCAGTTCTGGAGCTTCTGGAAATTCTAGATGGGAAGATTCTTATATAATGAACAAGCATGAGGAGGCGATAACTTCATCTTCCAGACAGCCAAGGAAAGCAAAAAGAAAGATCTCTAATGGTAATGAAGTGGCTACTTCTGCTGGTCCTTCTCGTCAAGGAAGAAGGCCTGTGAAAAACAATGTTCAAGAAATGTTCGGTCCTTTACTTGATTTGAACCCTGATGACTACCTTAGCAGAATTCATACATTGCACACTGATGCTGCAGCTTCCTCTAGCCTTTCTGTTGGTGTATCTACAGATAATATTTCAGGAAATAGAGAAGGATCAGATGTAGGGTCATACAATCAAAATGGAACAATCAATGAATCACAAAATGCCAATGGGCAAATCAGAGATTCAAATAATTTATCTACTCCACGAATTTTGACTTTATGTGTAGAAGATACCTCACTTACTATGGGACAAACACCAGTAGATGAATGTCCTGATAATATTGCTGATGGTTGTCAGGCTGATCATGTTGCTGACTTACCTACTTCAACAGAGTTGTCATGTGTCATATGTTTGACAGAGTTCAGCTCAACACGTGGGGTTTTGTCATGTGGACATCGGTTTTGTTATTCATGTATCCAGACTTGGGTTGATCATAGGACTACGATGGGAAAGAACTCAATATGCCCCTTGTGCAAGTCAAGTTTTGACAGCATTATTAAATATGAGGATGCCGCCGCTGATCAGAAAGTATACTCCCAAACAATCCCATGTGGCATTCCAATCTCAGATATAATAATCCTTATGGATCGAGAGCCACCAAGTTATGGTTCTGAGTCCTCACCGACAGGTGCTTGTGTTGTTTGCCGTGGTCGGGAACCTGAGGATTTGCTCATGAATTGTCATCTTTGCCATATTCGACAAATCCATTCCTACTGCCTGGACCCTCCTTTATTGCCATGGACATGCAGTCACTTCAGGTCACATATTTCTGATATTAGGGAGTTGTGTAAGCAACTGTTGTTGTCTAAACCTTTCCCCATGGAATTCATTGAGATTGTCTAA 1461 0.4086 MLRFTESIAFPIQGMESVVATVSGYHGLERFNLIKLISHAGANYVGAMSKSITHLICWKFQGKKYNLARKFKIVIVNHQWVEDCIKQGRRVPEESYIVKSGQEVGPILLQAPHVKNKVLGHRSDDIGSKNQTTEFSSGASGNSRWEDSYIMNKHEEAITSSSRQPRKAKRKISNGNEVATSAGPSRQGRRPVKNNVQEMFGPLLDLNPDDYLSRIHTLHTDAAASSSLSVGVSTDNISGNREGSDVGSYNQNGTINESQNANGQIRDSNNLSTPRILTLCVEDTSLTMGQTPVDECPDNIADGCQADHVADLPTSTELSCVICLTEFSSTRGVLSCGHRFCYSCIQTWVDHRTTMGKNSICPLCKSSFDSIIKYEDAAADQKVYSQTIPCGIPISDIIILMDREPPSYGSESSPTGACVVCRGREPEDLLMNCHLCHIRQIHSYCLDPPLLPWTCSHFRSHISDIRELCKQLLLSKPFPMEFIEIV 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0642 486 Pfam Ring finger domain 319 365 IPR001841 -
Dere01g0642 486 SUPERFAMILY RING/U-box 309 371 - -
Dere01g0642 486 PANTHER F5A8.9 PROTEIN 129 460 - -
Dere01g0642 486 Pfam twin BRCT domain 18 80 IPR001357 -
Dere01g0642 486 ProSiteProfiles Zinc finger RING-type profile. 320 365 IPR001841 -
Dere01g0642 486 SMART ring_2 320 364 IPR001841 -
Dere01g0642 486 MobiDBLite consensus disorder prediction 121 142 - -
Dere01g0642 486 MobiDBLite consensus disorder prediction 155 192 - -
Dere01g0642 486 SUPERFAMILY BRCT domain 13 99 IPR036420 -
Dere01g0642 486 SMART BRCT_7 12 88 IPR001357 -
Dere01g0642 486 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 314 384 IPR013083 -
Dere01g0642 486 Gene3D BRCT domain 12 103 IPR036420 -
Dere01g0642 486 ProSiteProfiles BRCT domain profile. 7 98 IPR001357 -
Dere01g0642 486 SUPERFAMILY FYVE/PHD zinc finger 406 463 IPR011011 -
Dere01g0642 486 ProSitePatterns Zinc finger RING-type signature. 336 345 IPR017907 -
Dere01g0642 486 MobiDBLite consensus disorder prediction 174 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0642 Dere-ChrDere01 13405154 13410114 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0642 52 104 Core DNA Replication Machinery Family AT4G02110 51.852 1.26e-11 65.5