Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0624 ATGGGGATCCCAATAACATGTACTCTTCTCTGTTTCATGACACTCCTCTGGTTTTCCAGTTCTGCAAATGCTTTGCTCTCTCCTAAAGGAGTGAACTTCGAAGTTCAAGCTTTGATGGCCATAAAAGCTTCTCTAGTGGATCCTCATGGCGTTTTAGATAATTGGGATGGGGATGCCGTTGATCCTTGTAGCTGGACCATGGTCACATGTTCTTCTGACAACCTCGTCGTTGGCCTGGGAACTCCCAGTCAAGGCTTATCTGGTACTCTATCTCCCAGCATAGGAAACCTAACGAACCTTCAGATTGTGTTGTTACAGAATAATAACATAACAGGTTCAATCCCTTCAGAGATGGGAAAGCTTTCCAAGCTCCAAACTTTAGATCTCTCAGATAACTTCTTCAATGGGGAAATTCCTCCCTCTCTAGGTCGCTTGAGAAGGCTTCAGTACTTGAGGCTCAACAATAACAGTCTCTCTGGAGGATGTCCAGAGCCACTAGCTAACATGACACAGCTTGCTTTTCTTGACTTGTCCTACAACAATCTGAGTGACCCTGTACCTACAATCTTGGCCAAATCCTTCAACATCATTGGAAATCCCCTCATCTGTGGTACTGGGAAAGAAAAAAACTGCCATGGGATGACACTGATGCCTATGTTCATGAACTTAAACAGTACAGAGGGTGCTCTACCTTCTGGCAGACTAAAATCACACAAAATGGCCATTGCCTTTGGCTTGAGCCTAGGCTGCCTCTGCCTCATAGTTCTTGGTTTTGGGCTATTTCTGCTGTGGAGGCATAAGCACAATCAACAAGCATTCTTTGATGTCAAAGACCGGCATCATGAGGAAGTGTACCTAGGAAACTTGAAGAGGTTCCAATTCAGAGAACTCCAGATTGCTACCAACAACTTCAGCAGCAAAAACATTCTAGGAAAGGGTGGTTTTGGGCACGTGTACAAAGGAGTTCTTCAAGATGGGACTCTTGTGGCTGTGAAGAGGCTGAGAGATGGGAATGCCATTGGAGGAGAAATCCAGTTTCAGACTGAAGTTGAAATGATCAGCTTGGCAGTGCACAGAAATCTCCTCAGGCTCTACGGATTCTGCATGACACCCTCAGAAAGGCTCCTGGTTTACCCTTACATGTCTAATGGCAGTGTTGCTTCCCGTCTCAAGGGAAAACCAGTGTTGGACTGGGGCACAAGGAAGCAGATAGCCATAGGAGCAGCAAGGGGACTGCTATACCTTCATGAGCAGTGTGACCCAAAGATAATTCATAGGGATGTGAAGGCTGCAAATATATTGCTTGATGACTACTGTGAGGCAGTGGTTGGAGATTTTGGATTGGCAAAACTATTGGATCACCAAGACTCACATGTCACTACTGCAGTGAGGGGTACTGTGGGGCACATTGCACCTGAATATCTCTGCACAGGGCAGTCCTCTGAGAAGACTGATGTCTTTGGCTTTGGCATTCTCCTTCTTGAACTGATCACAGGCCAGAGGGCTCTAGACTTTGGCAAAGCAGCTAATCAGAAAGGAGCCATGCTTGATTGGGTGAAGAAAATTCATCAGGAGAAGAAACTTGAATTACTAGTGGACAAGGATTTGAAGAACAACTATGACCGGATTGAGCTTGAGGAAATGGTTCAAGTGGCTCTTTTGTGTACTCAATACCTTCCAGGCCACAGACCTAAAATGTCTGAAGTAGTACGAATGCTTGAAGGTGATGGACTAGCAGAAAGATGGGAAGCTTCTCAAAGAGCTGACACAACAAATAAGTGCAGACAACCCCATGAGTTTTCTTCATCAGATCGCTATTCTGATCTCACTGATGACTCTTCTTTACTAGTCCAGGACATGGAGCTTTCGGGCCCAAGGTGA 1881 0.4551 MGIPITCTLLCFMTLLWFSSSANALLSPKGVNFEVQALMAIKASLVDPHGVLDNWDGDAVDPCSWTMVTCSSDNLVVGLGTPSQGLSGTLSPSIGNLTNLQIVLLQNNNITGSIPSEMGKLSKLQTLDLSDNFFNGEIPPSLGRLRRLQYLRLNNNSLSGGCPEPLANMTQLAFLDLSYNNLSDPVPTILAKSFNIIGNPLICGTGKEKNCHGMTLMPMFMNLNSTEGALPSGRLKSHKMAIAFGLSLGCLCLIVLGFGLFLLWRHKHNQQAFFDVKDRHHEEVYLGNLKRFQFRELQIATNNFSSKNILGKGGFGHVYKGVLQDGTLVAVKRLRDGNAIGGEIQFQTEVEMISLAVHRNLLRLYGFCMTPSERLLVYPYMSNGSVASRLKGKPVLDWGTRKQIAIGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLCTGQSSEKTDVFGFGILLLELITGQRALDFGKAANQKGAMLDWVKKIHQEKKLELLVDKDLKNNYDRIELEEMVQVALLCTQYLPGHRPKMSEVVRMLEGDGLAERWEASQRADTTNKCRQPHEFSSSDRYSDLTDDSSLLVQDMELSGPR 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0624 626 Gene3D Ribonuclease Inhibitor 31 213 IPR032675 -
Dere01g0624 626 Gene3D Transferase(Phosphotransferase) domain 1 381 593 - -
Dere01g0624 626 Gene3D Phosphorylase Kinase; domain 1 273 380 - -
Dere01g0624 626 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 14 584 - -
Dere01g0624 626 MobiDBLite consensus disorder prediction 584 606 - -
Dere01g0624 626 SUPERFAMILY Protein kinase-like (PK-like) 281 574 IPR011009 -
Dere01g0624 626 MobiDBLite consensus disorder prediction 584 626 - -
Dere01g0624 626 ProSitePatterns Protein kinases ATP-binding region signature. 310 332 IPR017441 GO:0005524
Dere01g0624 626 ProSitePatterns Serine/Threonine protein kinases active-site signature. 423 435 IPR008271 GO:0004672|GO:0006468
Dere01g0624 626 Pfam Protein kinase domain 305 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g0624 626 Pfam Leucine rich repeat N-terminal domain 34 71 IPR013210 -
Dere01g0624 626 Pfam Leucine Rich repeats (2 copies) 98 138 IPR025875 -
Dere01g0624 626 FunFam Putative LRR receptor-like serine/threonine-protein kinase 31 213 - -
Dere01g0624 626 FunFam Somatic embryogenesis receptor kinase 1 273 380 - -
Dere01g0624 626 FunFam Somatic embryogenesis receptor-like kinase 1 381 593 - -
Dere01g0624 626 ProSiteProfiles Protein kinase domain profile. 304 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g0624 626 SMART serkin_6 304 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g0624 626 SUPERFAMILY L domain-like 34 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0624 Dere-ChrDere01 13129756 13134092 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0624 1 626 Receptor kinase-like Gene Family AT5G16000 78.481 0.0 1006
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Dere01g0624 Pkinase 4e-43 CL0016