Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0619 ATGGCCTCTAAAATGGAAACCGAGAATTCAACCGATGCTTCTCCATCATCGCCAAAGAACAGATACAAAGATCCAGATGACGGTCGGCAGCGATTTTTGCTCGAATTAGAATTTGTTCAATGCCTTGCTAATCCTACCTACATACACTATTTGGCTCAGAACCGATATTTTGAAGATGAAGCATTCATTGGATACTTGAAGTACCTTCAATATTGGCAACGACCTGAATACATTAAATATATTATGTATCCTCATTGCCTGTTCTTTCTTGAACTTCTTCAGAATGCAAATTTTCGAAATGCAATGGCACATCCTGGTAATAAGGAACTTGCACATAGACAGCAATTCTACTTCTGGAAGAACTATAGGAACAATCGGCTAAAGCACATTTTGCCAAGGTCACTTCCTGAATCTAGTGCCACACCTGCACCTGCTGCAGCTGCCTCAACTCCATCCCAGCTGCCTGCTCTGCCGCCAGTAACAGCTACGAATGTTTCGGTGACAGTATCATCTGCTCAAGCTCACTCTCCAATGCCATATGGTATGCCCCCTGGATCTACTCTTGCTAAGAATGATATGAGGAATCCTGCAATTGATCGGAGGAAGAGAAAGTAA 615 0.4276 MASKMETENSTDASPSSPKNRYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKYIMYPHCLFFLELLQNANFRNAMAHPGNKELAHRQQFYFWKNYRNNRLKHILPRSLPESSATPAPAAAASTPSQLPALPPVTATNVSVTVSSAQAHSPMPYGMPPGSTLAKNDMRNPAIDRRKRK 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0619 204 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 31 1 204 IPR008831 GO:0003712|GO:0006355|GO:0016592
Dere01g0619 204 Pfam SOH1 30 122 IPR008831 GO:0003712|GO:0006355|GO:0016592
Dere01g0619 204 Gene3D Mediator of RNA polymerase II, submodule Med31 (Soh1) 18 119 IPR038089 -
Dere01g0619 204 FunFam Mediator of RNA polymerase II transcription subunit 31 18 119 - -
Dere01g0619 204 MobiDBLite consensus disorder prediction 1 18 - -
Dere01g0619 204 MobiDBLite consensus disorder prediction 143 175 - -
Dere01g0619 204 MobiDBLite consensus disorder prediction 1 24 - -
Dere01g0619 204 MobiDBLite consensus disorder prediction 135 204 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SOH1 Dere01g0619 Med31 4.3e-35 No_clan