Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0606 ATGGAACTTGGCGACACATCATGCATCACGGCAGCCGAGTTGCCCACCCTCGGGCAACTCCTCCAGTACGACGGATACAGACGGACGGGACCCACCGGTGAAGACAGCGACACGGCGGAGCACCACACGCTTGATGTGACTGATTCCAGTCTCGAGCCTCGCTCGTTGCCTATCGTGCTTGCGTTCAACAATCTCACGTACAGTGTGAAAGTCCGCCAAAAACTGAACTTCTCAAAGCTGATTTTCCGACCGAGGAGTAAGCGTCTTGGAGCGCCTGAAAATAAGACTCTGCTGAATGATATCTCCGGCGAGGCTCGCGACGGCGAGATCCTCGCCGTTATGGGGGCTAGTGGTTCGGGAAAATCCACTCTGATTGATGCCTTGGCAAACCGAATAGCCAAGGGAAGCTTGAAAGGGAGCGTGACATTGAACGGCGAGGGCTTGGAATCGCGGCTTCTGAAAGCGATTTCAGCCTATGTGATGCAAGACGACCTTCTCTTTCCAATGCTCACAGTGGAAGAGACTCTGTTGTTCGCAGCTGAATTCCGATTGCCTCACAGGCTCTCTAGGTCCAAGAAGAAGATGCGAGTACAAGCTCTGATCGACCAGCTCGACCTCCGAGACGCTGCCAAAACCGTTATCGGTGACGAAGGCCACCGTGGGGTCTCCGGCGGTGAAAGACGCCGTGTCTCCATCGGTATTGATATAATCCACGACCCTATCGTATTGTTCCTTGATGAACCTACCTCGGGACTCGACTCCACGAGCGCATTCACGGTGGTGAAGGTCTTGCAGACAATCGCCCGCACCGGAAGCATCGTGATCATGTCCATACACCAACCCAGTTCCCGAATACTTGGCCTTCTGGACAATATGATCTTCTTATCACGTGGAGAAATAGTGTTCAGCGGTTCACCTATGCAGCTCTCGCTCTTCTTTGCTCAATCTGGACACCCAATGCCGGAAAATGAGAACCAAACCGAGTTTGCATTGGACCTGATTCGTGAGCTAGAAGAAGGCTCATCAAGCGGAACTAAGAGCTTGGTGGAATTTAACAAGTCGTGGCAGAGCATGAGGCAGACAAGAAGCAACAACTACACTGAGGGTGATCCCCATGGATTATCATTGAAAGAAGCGATTAGCGCAAGCATTTCGAGGGGTAAACTAGTGTCAGGTACCACCGTAAACACCAATAAAGCAAGACTAACTTCAACGGTCCCGTCATTTGCCAACCCAATCTGGATTGAAGTGGCAAAGCTTTCGAAACGATCATATATCAATTCCCGAAGAATGCCTGAGCTATTTGGGGTTCGATTGGCTGTGGTATTGGTGACTGGGTCCATTCTAGCCACGGTGTTTTGGCAATTAGATGACTCTCCAAAAGGGGTCCAAGAAAGGCTTAGCTTCTTCGCATTCGCCATGTCCTCCACCTTCTACACAACCGCAGAAGCACTCCCTGTTTTCCTCCAAGAGCGATACATCTTCATGAGAGAAACCGCTTACAACACATACCGTCGATCGTCCTATGTCGTGTCTCGCGCTCTTGTAGCATTACCTTCATTACTTTTCCTCTCGTTCACTTTTGCAACGACGACGTTTTGGGCAGTGGGGCTTGAGGGAGGATTATACGGGTTCTTGTTCTATTTCCTCTTCATCTTCGCTTCGTTCTGGGCAGGAAACTCCTTCGTCACCTTCCTCTCCGGCGTGCTACCTCACGTGATGCTGGGTTACACAATAGTGGTGAAAATCTTAGCATATTTCTTGCTCTTCAGTGGATTCTTCATTAACAGAGATAGAATTCCAGTTTACTGGGTGTGGTTTCACTACTTGTCTTTGGTGAAATACCCATACGAAGCTGTTATGCAGAACGAGTTTGATGACCCAGCAAATTGCTTTGTGAAAGGGGTGCAAATTTTCGATAACACACCGCTCAGGTTGGTGCCAACTTCCACGAAATTGAAGCTATTGGAGAGCTTTAGTGCCACATTAGGGAAGAATATCACGAGCTCAACGTGCGTGGCAACAGGTGTGGATATATTGCAGCAGAATGGGGTAACACAGTTGAGCAAGTGGAACTGTTTGTGGGTTACAGTGGGTTGGGGTTTCTGGTTTAGGACTCTGTTTTACTTCTCCTTGTTGCTAGGAAGCAAGAATAAGAGGAGGTAA 2166 0.4945 MELGDTSCITAAELPTLGQLLQYDGYRRTGPTGEDSDTAEHHTLDVTDSSLEPRSLPIVLAFNNLTYSVKVRQKLNFSKLIFRPRSKRLGAPENKTLLNDISGEARDGEILAVMGASGSGKSTLIDALANRIAKGSLKGSVTLNGEGLESRLLKAISAYVMQDDLLFPMLTVEETLLFAAEFRLPHRLSRSKKKMRVQALIDQLDLRDAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPIVLFLDEPTSGLDSTSAFTVVKVLQTIARTGSIVIMSIHQPSSRILGLLDNMIFLSRGEIVFSGSPMQLSLFFAQSGHPMPENENQTEFALDLIRELEEGSSSGTKSLVEFNKSWQSMRQTRSNNYTEGDPHGLSLKEAISASISRGKLVSGTTVNTNKARLTSTVPSFANPIWIEVAKLSKRSYINSRRMPELFGVRLAVVLVTGSILATVFWQLDDSPKGVQERLSFFAFAMSSTFYTTAEALPVFLQERYIFMRETAYNTYRRSSYVVSRALVALPSLLFLSFTFATTTFWAVGLEGGLYGFLFYFLFIFASFWAGNSFVTFLSGVLPHVMLGYTIVVKILAYFLLFSGFFINRDRIPVYWVWFHYLSLVKYPYEAVMQNEFDDPANCFVKGVQIFDNTPLRLVPTSTKLKLLESFSATLGKNITSSTCVATGVDILQQNGVTQLSKWNCLWVTVGWGFWFRTLFYFSLLLGSKNKRR 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0606 721 SMART AAA_5 107 299 IPR003593 GO:0016887
Dere01g0606 721 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 75 322 IPR003439 GO:0005524
Dere01g0606 721 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 46 708 - -
Dere01g0606 721 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 86 309 IPR027417 -
Dere01g0606 721 Pfam ABC-2 type transporter 420 625 IPR013525 GO:0016020|GO:0140359
Dere01g0606 721 Gene3D - 77 314 IPR027417 -
Dere01g0606 721 FunFam ABC transporter G family member 6 87 313 - -
Dere01g0606 721 ProSitePatterns ABC transporters family signature. 222 236 IPR017871 GO:0005524|GO:0016887
Dere01g0606 721 Pfam ABC transporter 98 250 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0606 Dere-ChrDere01 12807128 12809579 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0606 97 309 Calmodulin-binding Proteins AT2G36910 28.636 1.28e-12 69.7