Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0564 ATGGATGGTGAAAATAGTTCATCTCTGAATAAAATGGTACAGTGTCGAATATGTCACGACGACGATGAAGACTCAAACATGGAGGCTCCCTGTTCTTGTTGTGGTAGCTTGAAGTATGCACATAGAAAATGTGTTCAAAGATGGTGCAATGAGAAAGGTGATACAATCTGTGAGATTTGCCAACAGCAATTTAAGCCTGGTTATACAGCGCCACCTCCACTATTCCAATATGGTAGTTCTCCATTGAATTTTAGAGGTAATTGGGAGATTTCCAGAAGGGATCTGCAAAGTCATCAGTTTATAACCATGTTTGCTGCTAATCGTGAATTCTCAGACACTGACTTGGAATATTCAGCCCCAACTACAGGGAGTCTGATCTGCTGTCGCATTGTTGCAGTTATTTTTATTACGCTTCTTGTTTTACGCCATACCCTTCCAATTATACTCAGTGGGGCAGGGGAATATTCATTGACCCTTTGTTTGTTACTGGTCTTGAGAACAGTTGGAATACTTCTCCCTGTTTGTATAATGGTTAAGGCATTTACTATAATCCAGCGGCGAAGACACCAGGATCATTTTCCCTCTAATCTACCACATGAGGAGAGTGTCTTGGGACAACCTGAATCTCGTGTCATTCATATTTTGTGA 648 0.4105 MDGENSSSLNKMVQCRICHDDDEDSNMEAPCSCCGSLKYAHRKCVQRWCNEKGDTICEICQQQFKPGYTAPPPLFQYGSSPLNFRGNWEISRRDLQSHQFITMFAANREFSDTDLEYSAPTTGSLICCRIVAVIFITLLVLRHTLPIILSGAGEYSLTLCLLLVLRTVGILLPVCIMVKAFTIIQRRRHQDHFPSNLPHEESVLGQPESRVIHIL 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0564 215 ProSiteProfiles Zinc finger RING-CH-type profile. 7 67 IPR011016 GO:0008270
Dere01g0564 215 Pfam Protein of unknown function (DUF3675) 66 180 IPR022143 -
Dere01g0564 215 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 7 191 IPR033275 -
Dere01g0564 215 SMART ringv_2 14 61 IPR011016 GO:0008270
Dere01g0564 215 FunFam Zinc finger family protein 3 70 - -
Dere01g0564 215 SUPERFAMILY RING/U-box 12 65 - -
Dere01g0564 215 CDD RING_CH-C4HC3_MARCH 15 61 - -
Dere01g0564 215 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 70 IPR013083 -
Dere01g0564 215 Pfam RING-variant domain 15 60 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0564 Dere-ChrDere01 12271747 12274338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0564 14 61 C3H Transcription Factor Family AT2G37950 49.020 1.31e-07 48.5