Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0552 ATGGCTTCCCACACCTCGGCAATGCCCAAAACCCAAACCCTAAACTCGGTTCAGTTGTTCCTCAGTGCACACGAATCCCTACATTCATCGCCTCTCCCACCGTTACTCTCTCGCCTATCACATCACTCCTCCCTTCCCCCTCTTCCCTCTTCTTTCCCCCAATCCAAACTTATTCCCAAAACCCGCTTTGTGGTGGACGCATTTCGCCATGCCGGCGATTACTCTGTTGCCTACTTCCTTTCCCATTTCCACTCTGATCACTACACCGGTCTTAGCACGAATTGGTCGAAAGGCATTATTTATTGCTCAAACACCACTGCTCGGCTTCTCGTTGAAGTGCTCAAGGTTCCTTCAAAGTTCGTAGTCCCTTTACGGCTCTGTGAGCCGGTTGAGATTGATGGCTGTGAAATTACCCTGATTGATGCAAATCATTGCCCCGGTGCGGTGCAGTTCTTGTTCAAAATTCCGGGTGCTGATGGAAAGTGCGAGAGATATGTTCACACGGGAGATTTTCGGTTCTCTATAGCAATGAAATCAGAGCCTCTACTTGCTGCATTTGTTGGTGCGGACGCTGTATTTCTGGACACAACCTATTGTCACCCTAAATTTCAATTTCCTAGCCAAGCAGAGTCTGTAGCTTATGTAGTTGATGTAGTAGGGAGGGTTGAAAGTGAATCTGATTGTTCAATTAGAAATGTTTTGTTCCTCGTTGCTACTTATGTTGTTGGGAAAGAGAGGATTCTGCTTGAACTTGCTCGTAGGTTTAAACGTAAAGTGCATGTGGATGCCAGGAAAATGGAGGTTTTGCGGGTTCTTGGGTATGGGGAAAGTGGTGAGTTTACAGAGGAAGAGTCTGAAACTAATATTCATGTCGTTGGGTGGAATGTGTTGGGTGAGACATGGCCATATTTTAGGCCCAATTTTGCTAGAATGAAGGACATTATGACTGAGAGAGGGTACTCCAAGGTTGTAGGTTTCGTTCCAACTGGATGGACTTATGAAGTGAAGCACAATAAATTTACTGTGAAGTCCAAGGATTCGTTTCAGATTCATCTTGTACCATATAGTGAGCATTCAAACTATGATGAGCTCAGGGAATATGTGAAGTTTTTGAAACCAAAGCGTGTTGTTCCTACAGTGGGCATAGATGCTGACAAAACTGACAGTAAACATGCTGAGAAAATGATGAAGCATTTTGCTGGATTAGTTGATGAGACAGCCAACAAGCAGGAATTTCTAAAGGGTTTTCATTGTGCACCTCGTGAAGTGGGTTTCAAGTTTGAAAATGATGGTAGTGATGCGCTGAAGCGAGGGCAGAACAAGGAGACAGAAGCGGAGTTATCTGACAAGGAAGATGATAAAAGTATTAACCTGGATATTGTTTCAAATTTGTCTTCTGCTCTGCGGGAATCTGGCTTACGTGAACCCAATTTACTAAATGATGAGGAAACAGATAAAATTAATCAAGAAATTCGTTGTTGTTTGCCTGCATGGGTGTCTCAGACACAAGTGTTAGAGCTGATCAGCAAGTCAAGGGGCAATCTTGTTGAAGCTGTTTCTAATTTCTACGAACGTGAAACTGAATTTCATGAGCAAGTGTTTTCTAGTCAAAATCCTGTTTCCACGAACACATGCTTATCAAATGACAGTGATTTGCTGTCAGAACCACCTATTGTTACAAACAACTCTAGCAAAAGTGTTGACATTTTTCCAAGTCAAGACTTTAAGTTATCCACCCTGAGACATTCAGTAGCAAGTAGCATTCCTCCTGCTAAAAGGAAGAGATATAGTGAAAGAAAGCTAAACAAGAAAGTAAAAGTCAATGCAAAATCAGAATCAAGCGGGCCAAAGCAGTCAATGATAACAAAATTTTTTACTAAAGTCTTGCCTGGCGATACTCAATCTGGTAATGTTGGATCTAATGCTGATCAGAGCCCTAAAGTTGAAGACTTGCTTCTATCTGATGTTGAAAAGGGGTACGAGGATAAGATTGATCAATTTATGCAGATAATAAATGGCGATGAGTCATTAAAAAATTATGCTGTCACAATAATTGAGGAGACAAAAGGAGATGTAAATAAGGCATTGGATATATATTACTGTAATTCTGGCAAACTTGATGAGAACAAAAACTCAGTTCAAGTTGAGTGCAAAATGGATAGCCCTTCAGAAAAAAAGTGCATGTTACAGGAATTAAGAGCTACACCTGATATTTCTGTGCAGAGTGTATTAAGAGAGAATGTAGATGCAACTTTTGTATCTCTACCGCCTGAAAAATACAACCCTAAAGAACATGCATGTTGGAGAGATGGAGAGCCTGCTCCATATTTACATCTTGCACGAACCTTTAACCTACTTGAGGATGAGAAAGGGAAGATAAAGGCCACTTCAATGTTATGCAATATGTTCAGAAGTTTGTTGGCCTTGTCTCCGGCAGATGTGCTTCCTGCTGTGTATCTATGCACAAACAAAATTGCTGCAGACCATGAAAATAAGGAATTAAATATTGGTGGAAGTTTGGTTATTGCAGCGCTAGAAGAGGCATGTGGAACAAATCGATCAAAAATAAAGGAGATGTATAACGAATTTGGTGATCTTGGTGATGTTGCTCAAGAGTGTCGACAAACACAGAGATTGCTTGCTCCACCAACATCACTTCTAATTAAGGATGTTTTCTTCGCGCTCCAAAAGATAAGTTTACAAACAGGCAATGGAAGCACTCTTCGGAAGAAAAGCATAATTGTAAATCTCATGTGTTCTTGCCGTGAGAAGGAGATAAAGTTTCTTGTTCGCACTTTGGTCAGGAATTTACGAATTGGAGCAATGATTAGAACTGTTTTGCCTGCACTTGCTCAAGCTGTTGTTATAAATTCCTGCCCTATTTTGCGCCAAGATGGAACTGCAGAAAATTTGAAGGATAAGCTTCAGGGCCTTTCAGCAGCAATTGTTGAAGCATATAACATACTCCCGAATTTGGATCTTCTAGTACCATCTCTTATGAACAAAGGCACTAATTTTTGTGCTTCAAGTCTGTCAATGGTACCAGGAATACCTATCAAGCCTATGCTTGCAAAGATCACGAATGGCATTCCCCAAGTGCTGAAGTTGTTTCAAAATAAAGCGTTTACATGTGAATATAAGTATGATGGCCAGCGAGCCCAGATTCACAAATTAGTTGATGGGTCGATTCGTGTTTTTTCAAGAAACGGTGATGAAACAACATCAAGGTTTCCAGATCTGATTGATATAATTAAGGAATTCTGCAAGCCTGCTGCAGTGACTTTTATACTGGATGCAGAAGTTGTTGGTATTGATAGGAAGAATGGACATAGATATATGGCTTTCCAGGAGTTATCTTCACGTGGGAGAGGAAGTAAAGATGCTTCAGTTACTACAGATAACATAAAGGTTTGA 3414 0.4092 MASHTSAMPKTQTLNSVQLFLSAHESLHSSPLPPLLSRLSHHSSLPPLPSSFPQSKLIPKTRFVVDAFRHAGDYSVAYFLSHFHSDHYTGLSTNWSKGIIYCSNTTARLLVEVLKVPSKFVVPLRLCEPVEIDGCEITLIDANHCPGAVQFLFKIPGADGKCERYVHTGDFRFSIAMKSEPLLAAFVGADAVFLDTTYCHPKFQFPSQAESVAYVVDVVGRVESESDCSIRNVLFLVATYVVGKERILLELARRFKRKVHVDARKMEVLRVLGYGESGEFTEEESETNIHVVGWNVLGETWPYFRPNFARMKDIMTERGYSKVVGFVPTGWTYEVKHNKFTVKSKDSFQIHLVPYSEHSNYDELREYVKFLKPKRVVPTVGIDADKTDSKHAEKMMKHFAGLVDETANKQEFLKGFHCAPREVGFKFENDGSDALKRGQNKETEAELSDKEDDKSINLDIVSNLSSALRESGLREPNLLNDEETDKINQEIRCCLPAWVSQTQVLELISKSRGNLVEAVSNFYERETEFHEQVFSSQNPVSTNTCLSNDSDLLSEPPIVTNNSSKSVDIFPSQDFKLSTLRHSVASSIPPAKRKRYSERKLNKKVKVNAKSESSGPKQSMITKFFTKVLPGDTQSGNVGSNADQSPKVEDLLLSDVEKGYEDKIDQFMQIINGDESLKNYAVTIIEETKGDVNKALDIYYCNSGKLDENKNSVQVECKMDSPSEKKCMLQELRATPDISVQSVLRENVDATFVSLPPEKYNPKEHACWRDGEPAPYLHLARTFNLLEDEKGKIKATSMLCNMFRSLLALSPADVLPAVYLCTNKIAADHENKELNIGGSLVIAALEEACGTNRSKIKEMYNEFGDLGDVAQECRQTQRLLAPPTSLLIKDVFFALQKISLQTGNGSTLRKKSIIVNLMCSCREKEIKFLVRTLVRNLRIGAMIRTVLPALAQAVVINSCPILRQDGTAENLKDKLQGLSAAIVEAYNILPNLDLLVPSLMNKGTNFCASSLSMVPGIPIKPMLAKITNGIPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGSIRVFSRNGDETTSRFPDLIDIIKEFCKPAAVTFILDAEVVGIDRKNGHRYMAFQELSSRGRGSKDASVTTDNIKV 1137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0552 1137 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 981 1122 - -
Dere01g0552 1137 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 755 1003 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Dere01g0552 1137 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 291 1136 - -
Dere01g0552 1137 MobiDBLite consensus disorder prediction 429 451 - -
Dere01g0552 1137 Gene3D - 754 1020 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Dere01g0552 1137 FunFam DNA ligase 204 358 - -
Dere01g0552 1137 Pfam DNA ligase N terminus 775 951 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Dere01g0552 1137 Gene3D - 58 380 IPR036866 -
Dere01g0552 1137 Pfam DNA repair metallo-beta-lactamase 278 381 IPR011084 -
Dere01g0552 1137 SUPERFAMILY Metallo-hydrolase/oxidoreductase 76 381 IPR036866 -
Dere01g0552 1137 CDD SNM1A-1C-like_MBL-fold 43 201 - -
Dere01g0552 1137 Gene3D - 204 358 - -
Dere01g0552 1137 Gene3D DNA ligase/mRNA capping enzyme 1021 1137 - -
Dere01g0552 1137 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 1045 1053 IPR016059 GO:0003909
Dere01g0552 1137 Pfam ATP dependent DNA ligase domain 1021 1131 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0552 Dere-ChrDere01 12117619 12136342 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0552 757 1137 Core DNA Replication Machinery Family AT1G08130 37.795 8.38e-80 277