Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0551 ATGTGTTCTAAGGCTTTTGAGTTTTCCTCTCCGTATCTGATGGATTTGTTCTATGATGAGAAACTTGGCTATTTTGAATATGCAAAGGAAACAACTATTGAAGCAGCTGATGCTTGCTTGACCTATGAAGCAACAATAACTAAGATAAACTCTTTTCTAGAAGATGCGATCCATTCATCATGTGAAGGAATAATGGTGAAATCTTTAGATGTTGATGCTGGATATTCTCCATCAAAGCGTACTGACACATGGTTAAAGGTCAAGAGAGATTATGTGGAAGGATTAAATGATTCTCTTGATTTAGTACCAATCGGTGGTTGGCATGGAAATGGAAGGAAGGCTGGATGGTACAGTCCATTTCTCATGGCATGTTACAATCCTGAAACAGAAGAGTATCAAAGTGTATGCCGTGTTATGTCTGGGTTCTCAGATTCCTTTTACATAGAGATGAAAGAATTCTTTTCTGGGGACAAAATATTGTCCAAAAAGCCACCATATTATCGAACAGCCGAGGTGCCCGACAAGTGGTTTTGTCCACTAAAAGTTTGGGAAATAAGAGGTGCAGAATTTACAGTATCTCCAGTTCACCATGCTGCCATTGGTTTGGCTCATCCGTCTCGTGGCATCTCAATCAGATTCCCGAGATTTGTTCGCACTGTATTGGACAGGAACCCAGAAGAGTGTAGCACTGCTGCTGATATAGCTGAAATGTTTCATTCTCAGACTCGGAAGATGGATGTGGCCACTGATGATTGA 756 0.4074 MCSKAFEFSSPYLMDLFYDEKLGYFEYAKETTIEAADACLTYEATITKINSFLEDAIHSSCEGIMVKSLDVDAGYSPSKRTDTWLKVKRDYVEGLNDSLDLVPIGGWHGNGRKAGWYSPFLMACYNPETEEYQSVCRVMSGFSDSFYIEMKEFFSGDKILSKKPPYYRTAEVPDKWFCPLKVWEIRGAEFTVSPVHHAAIGLAHPSRGISIRFPRFVRTVLDRNPEECSTAADIAEMFHSQTRKMDVATDD 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0551 251 Pfam ATP dependent DNA ligase domain 32 88 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Dere01g0551 251 SUPERFAMILY Nucleic acid-binding proteins 97 241 IPR012340 -
Dere01g0551 251 ProSiteProfiles ATP-dependent DNA ligase family profile. 45 126 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Dere01g0551 251 FunFam DNA ligase 93 250 - -
Dere01g0551 251 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 13 244 - -
Dere01g0551 251 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 45 94 - -
Dere01g0551 251 CDD OBF_DNA_ligase_I 97 240 - -
Dere01g0551 251 Gene3D - 94 250 IPR012340 -
Dere01g0551 251 Pfam ATP dependent DNA ligase C terminal region 114 219 IPR012309 GO:0003910|GO:0006281|GO:0006310
Dere01g0551 251 Gene3D - 18 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0551 Dere-ChrDere01 12094836 12099003 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0551 18 241 Core DNA Replication Machinery Family AT1G08130 41.593 7.42e-64 211