Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0542 ATGGAAAGGGAAAATATGCAAAGTTTTGGTTTTATAGATCCAAGTCTCTTAGCAAATTTGGGGACTGAGAATCTCAATCAGGCAATGGATTTCAATAACAATCCAATTCCATTAAATCAAATCCCAGCAGATTTTAGGTCTCTTCCACCTTACATGGTGCCTCAATTTCGTCAGGCAGACGAAGTGCAGTGGAAGGCTGTGCAACTATTTTGGCAGCAACAACTTTACGAGATACAAAACGCTGAAGCCATTAAGGGTCAGCAGCAATTGCCTCTAGCTCGTATAAGGAGGATCATGAAAGCTGACAATGAAGTGCAGATGATCAGTACAGAAACTCCAATATTGTTCGCAAAAGCATGTGAAATGTTCATTCAAGAGCTCACCCTTCGTGCCTGGATGCGCACCCAACAGAACAAGAGGCACACAGTTTCTCGCCGTGACATTGCGGAGGCCATTAATCAGATTGAAGTCTTTGATTTCCTCACCGATATTGTTCCATTTGGCCATCCCCATCAATCTTCTGCTCATCATCACACCAAGGAAATGAATACTGCAAATATTGAAGGAACTCGAGCTGCCCAGCCTTCTGCTGCTCCAATTATGAACTATCCTATTATGAATATGGGCATGGATCAGGGTGCAAGTAGCCAACAATTTTCTGAGCCCTACATGATGCAGCCAACAATTGTGCCCTCTTCAGAATTTCCCTACAATTTCCCTCCAAATTAA 729 0.4294 MERENMQSFGFIDPSLLANLGTENLNQAMDFNNNPIPLNQIPADFRSLPPYMVPQFRQADEVQWKAVQLFWQQQLYEIQNAEAIKGQQQLPLARIRRIMKADNEVQMISTETPILFAKACEMFIQELTLRAWMRTQQNKRHTVSRRDIAEAINQIEVFDFLTDIVPFGHPHQSSAHHHTKEMNTANIEGTRAAQPSAAPIMNYPIMNMGMDQGASSQQFSEPYMMQPTIVPSSEFPYNFPPN 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0542 242 Gene3D Histone, subunit A 53 166 IPR009072 GO:0046982
Dere01g0542 242 FunFam Nuclear transcription factor Y subunit C 55 167 - -
Dere01g0542 242 SUPERFAMILY Histone-fold 72 161 IPR009072 GO:0046982
Dere01g0542 242 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 63 182 - -
Dere01g0542 242 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 89 152 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0542 Dere-ChrDere01 11883431 11886314 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0542 67 166 CCAAT-HAP5 Transcription Factor Family AT1G56170 58.000 3.50e-37 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Dere01g0542 CBFD_NFYB_HMF 1.7e-16 CL0012