Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0540 ATGGAACAACCGCCACCTTCTTCCTCCACCACCGTCTCCGGCAAGCTCCGTCTGATGTGCAGCTACGGCGGCCACATAGTCCCTCGCCCCGGCTCCAAGTCCCTCTGCTACGCCGGCGGCGAGACCCGCATCGTCGCGGTCGACCGCCGAAGTATCACCACCCTCGACTTGCTCGTCTCGCACCTCTCCACCACTCTCTCTGTGAACTTCTCGTTCACTCTCAAGTTCCAGCTTCCCCATCTCGACCTCGACTCTCTCATTTCTCTCACCTCCGATGAGGACTTCCAAATCCTCATTGACGAGCACGACCGCCTCTGTTCCGCTCCTCCTCCTTCCGCTACACCCTCCCGTATCCGATTATTCCTCTTCCCTGTACATTCGGGTTCGGGGCGGCCCGTGATTCGGCACCCGAAAACTGAGGCTTGGTTCTTCGATGCGCTCAAGAGTGCTAATATCATGCATAAGGGGTTCGGTGAGGCCAACGGGTCGGGCAGTGAGGCTCATGGGTTCGTCTCTTCGGGTCCGGAGTCGATAGTTTTGGAGACCAGTTCGTCTTTTGGGTCAACTTCGTCTTCAGCTTCGTTGACCAATTTGCCTTCTTTGAAAGCTCAGAATAATGAGGATGTCGAGCTTGTCTTGCAAGATAGTCAAGTAAAATTGACCCCTACCAATACTGCTCCTAGTGATAATAATTCTGTTTCAAATGTTGTGCCCCACCATCAAAATATATCTTTCCAATATCCCCTCATTCATGCTATTTCAATAGAGACCAGAGGTTATAATACAGAAACCATTAAACTAGAGACTATAAACCCTAGCTTTTCTTCTGGGATCATGGCAAATAACCCCGACATGGAATTAGTGAATAATGCTTCATTTCAACACTTGAATCAAGTGCAGAAGCAACATGTGCAGTTTGTACCATCTTACCAGCATATGTACCAGCAACAACAGCTATTGCAGTACATGATATATCATCCAAATCAACCATATCCAATATACCTTGTGCCTTGTGGGCAAATACCACCTAACACTTTGCCTTCAACAGCTTCCAATCAAGCTTCATTCTTGAACCCAAGTTCTTCCTTTATGACTTCTCAAGCCTCACAGAATCACAGACCGGCCAATTCCGCGACGTTTTCTGTTGGTGCTTTGTGTTACGATGGAAGTCAGCATCAAGAAACTGATCTTCCTCTGGCGTATCAACAATCTCAGACTGTTGCTGTAACTTCCACTGAAGCTCCTGAGTATGGGAATGAGCTTGAGGGTGACCTTGATCATGTTCAGATATACAAATCTCAACCTCCACCTCCGTCATTGCCTTCTCAATTCAGAACCATGACAAAAGATACAAAGGTTCGCTTACCAGAGGGTCTTGTTCAGGGACAAGACTAG 1395 0.4824 MEQPPPSSSTTVSGKLRLMCSYGGHIVPRPGSKSLCYAGGETRIVAVDRRSITTLDLLVSHLSTTLSVNFSFTLKFQLPHLDLDSLISLTSDEDFQILIDEHDRLCSAPPPSATPSRIRLFLFPVHSGSGRPVIRHPKTEAWFFDALKSANIMHKGFGEANGSGSEAHGFVSSGPESIVLETSSSFGSTSSSASLTNLPSLKAQNNEDVELVLQDSQVKLTPTNTAPSDNNSVSNVVPHHQNISFQYPLIHAISIETRGYNTETIKLETINPSFSSGIMANNPDMELVNNASFQHLNQVQKQHVQFVPSYQHMYQQQQLLQYMIYHPNQPYPIYLVPCGQIPPNTLPSTASNQASFLNPSSSFMTSQASQNHRPANSATFSVGALCYDGSQHQETDLPLAYQQSQTVAVTSTEAPEYGNELEGDLDHVQIYKSQPPPPSLPSQFRTMTKDTKVRLPEGLVQGQD 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0540 464 CDD PB1_UP2 19 123 - -
Dere01g0540 464 SUPERFAMILY CAD & PB1 domains 33 127 - -
Dere01g0540 464 Pfam PB1 domain 34 124 IPR000270 GO:0005515
Dere01g0540 464 PANTHER OS05G0427100 PROTEIN-RELATED 7 360 - -
Dere01g0540 464 SMART PB1_new 30 125 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0540 Dere-ChrDere01 11825248 11827245 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0540 16 138 MAP Kinase Kinase Kinase AT1G04700 41.463 4.28e-19 88.6