Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0520 ATGCGGATGAGCTGTAATGGATGCCGAGTCTTGAGAAAAGGTTGCAGTGAGAATTGCAGTATAAGGCCGTGCTTGCAGTGGATCAAAAGCCCAGAATCTCAAGCAAATGCTACTGTGTTTCTCGCCAAGTTCTATGGCCGTGCTGGACTCATGAACCTCATCAACGCTGGGCCCGAACACCTCCGTCCTGCGATTTTTCGGTCCTTGCTGTACGAGGCATGCGGGCGGATAGTGAACCCGATTTATGGGTCTGTGGGTTTATTGTGGTCAGGAAGCTGGCAGCTCTGTCAAGCCGCCGTGGAAGCCGTATTGAAGGGCGCGCCGATCACGCCGATCACCTCCGAGGCAGCCACGAGTGGGAGGGGCCCACCCCTCAAGGCTTACGATATCCGCCACGTGTCCAAAGACGAGAACTCGGCCGCGTCAACCGACCCTCAGCGCGTCTTTAAGACTCGGTCGCGGTTCAAGCGCTCCGTCGGCGGCGTCAAGCCGAAAGCCAACAACAACAACAAGGCAACGACCGGGCTGGGGTCCGTTGAACCCGGTCCAGCAGGCGACGCTCACGCTTCTACTCCAATCAGTTCATGGACCGGGTGCTGCATCACTGAACCGGTGCAGAACCGGTCGGCGAGTCACGAGTCATCGCTGAGCCACCAGTCGGAGGCAGTGAACGAGAGCAAAGAGAGCGAGAGCATGATCTCTGTAGAGACCGCCGAGACGTCGATCCTCTTCCGAGACGAACCGGAATCGACCGGGAAGGTGAGTGAGCGAGCCATCGACGAGAGCAGTGCCGATGTTGGTCTGGAGTTAACACTGGGGCTCGAACCGGCCTCACGTGCGAATCACGTGGTACCGGTGAAGAAGAGAAGGATCGAGTTCAGGGATAGTGAAGATGGGTCATCATGCAAGATGGACCTGGGTCTGAAGTACCCGGCTTGA 939 0.5761 MRMSCNGCRVLRKGCSENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPITSEAATSGRGPPLKAYDIRHVSKDENSAASTDPQRVFKTRSRFKRSVGGVKPKANNNNKATTGLGSVEPGPAGDAHASTPISSWTGCCITEPVQNRSASHESSLSHQSEAVNESKESESMISVETAETSILFRDEPESTGKVSERAIDESSADVGLELTLGLEPASRANHVVPVKKRRIEFRDSEDGSSCKMDLGLKYPA 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0520 312 PIRSF AS2 1 311 IPR017414 -
Dere01g0520 312 MobiDBLite consensus disorder prediction 207 257 - -
Dere01g0520 312 MobiDBLite consensus disorder prediction 132 190 - -
Dere01g0520 312 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
Dere01g0520 312 MobiDBLite consensus disorder prediction 207 238 - -
Dere01g0520 312 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Dere01g0520 312 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 3 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0520 Dere-ChrDere01 11333280 11334313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0520 1 308 AS2 family AT3G02550 57.729 5.21e-109 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Dere01g0520 LOB 1.2e-24 No_clan