Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0485 ATGAGTTTAGAAGCAAGTACTTACTTGGAAGCTCCCTCTCTTACACATTCTCCTTCCAGTGTATATATATATATAAGCACTCACCATCACTTCTCCTTCACTCTCTCGTCCCACCAAACAACTCCTTCAATGGAACAACCCACCACCACCGCCACTGCTCCGGCAACCTATCGTGGTGTTCGCATGCGAAAATGGGGCAAATGGGTGTCTGAAATCCGGGAGCCCGGCAAGAAGACTCGGATATGGCTAGGGAGCTATGAATCGCCGGAGATGGCAGCAGCAGCATACGACGTCGCAGCTTTACAGCTCCGAGGACGGGCGGCGCGGCTAAACTTCCCGGAGCTGACCGATAGCCTGCCCCGGCCGGCGAGCTCCCGAGCTGAGGACGTGCAGTTGGCAGCACAACAAGCGGCATTGAGGCTTAAGAGACCGGTGATCAGACGGTCGCCGGAGACAAGCTGTGGCACTACCACCATGGTGGCGCCGCCGGTGACGGTGGGGCTATCGCCAAGCCAAATTCGGGCCATAAATGAGTCACCACTGGATTCACCAAAGATGTGGATGCAAATGGCTGCTGAAGCTGCTCTAATGCTAGGGTTTGATCATCACGAGTCCGTGGTATTGTACGATGATGTTTTGGGGCTAAGTGAATGGGAAGAAATGCAGCATGATTCCATATGGGGCTTCTGA 690 0.5406 MSLEASTYLEAPSLTHSPSSVYIYISTHHHFSFTLSSHQTTPSMEQPTTTATAPATYRGVRMRKWGKWVSEIREPGKKTRIWLGSYESPEMAAAAYDVAALQLRGRAARLNFPELTDSLPRPASSRAEDVQLAAQQAALRLKRPVIRRSPETSCGTTTMVAPPVTVGLSPSQIRAINESPLDSPKMWMQMAAEAALMLGFDHHESVVLYDDVLGLSEWEEMQHDSIWGF 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0485 229 FunFam Ethylene-responsive transcription factor 2 55 114 - -
Dere01g0485 229 Pfam AP2 domain 57 105 IPR001471 GO:0003700|GO:0006355
Dere01g0485 229 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 43 155 - -
Dere01g0485 229 CDD AP2 57 115 IPR001471 GO:0003700|GO:0006355
Dere01g0485 229 PRINTS Ethylene responsive element binding protein signature 95 115 IPR001471 GO:0003700|GO:0006355
Dere01g0485 229 PRINTS Ethylene responsive element binding protein signature 57 68 IPR001471 GO:0003700|GO:0006355
Dere01g0485 229 ProSiteProfiles AP2/ERF domain profile. 56 113 IPR001471 GO:0003700|GO:0006355
Dere01g0485 229 Gene3D AP2/ERF domain 56 114 IPR036955 GO:0003700|GO:0006355
Dere01g0485 229 SMART rav1_2 56 119 IPR001471 GO:0003700|GO:0006355
Dere01g0485 229 SUPERFAMILY DNA-binding domain 56 114 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0485 Dere-ChrDere01 10746577 10747913 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0485 54 227 AP2-EREBP Transcription Factor Family AT1G71450 48.276 5.33e-49 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere01g0485 AP2 2.5e-13 CL0081