LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere01g0468	ATGGCAAGTTCAGATGAAGCTTTAGATTTAGAATGGATCCGCCATCATCTTCTTGGTCATGACTTTTCCTCCACAGAATCCTTCCTATCTAATCTCTTTCCGGTGAAACTGGAAGACCCTGTGTCAGAACTTGATCTGAAACCATATATTCCAGTGCAGAGTTTCTGTACTCTTCTTGAAGCAGACCACATGGAAGGTCTCAATTCCATGTCAGAGGAACCCCAGAAGAAGCCAACATCGCCTGAGAAGCCAGAATGTGATGAGGTGATAATAAAGCGGTACAGAGGAGTCCGGAGGAGGCCATGGGGGAAGTTTGCCGCGGAGATCCGTGACCCGACCCGGAAAGGGACCCGGGTTTGGCTGGGTACATTTGATAGTGAACTTGATGCTGCAAAGGCTTATGATTGTGCCGCCTTCAAGATGAGGGGTCAAAAGGCAATTTTGAATTTTCCTTTGGAGGCTGGAGAATCTAGCCCGGTTCCGAACCGATGTGGTCGGAAAAGGGGAAGAACAAGTTCATCAGAAGGATTGCTGGCCTAG	540	0.4833	MASSDEALDLEWIRHHLLGHDFSSTESFLSNLFPVKLEDPVSELDLKPYIPVQSFCTLLEADHMEGLNSMSEEPQKKPTSPEKPECDEVIIKRYRGVRRRPWGKFAAEIRDPTRKGTRVWLGTFDSELDAAKAYDCAAFKMRGQKAILNFPLEAGESSPVPNRCGRKRGRTSSSEGLLA	179

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere01g0468	179	CDD	AP2	92	151	IPR001471	GO:0003700\|GO:0006355
	Dere01g0468	179	SMART	rav1_2	93	157	IPR001471	GO:0003700\|GO:0006355
	Dere01g0468	179	Pfam	AP2 domain	93	143	IPR001471	GO:0003700\|GO:0006355
	Dere01g0468	179	MobiDBLite	consensus disorder prediction	154	179	-	-
	Dere01g0468	179	FunFam	Ethylene-responsive transcription factor 2	92	153	-	-
	Dere01g0468	179	PRINTS	Ethylene responsive element binding protein signature	94	105	IPR001471	GO:0003700\|GO:0006355
	Dere01g0468	179	PRINTS	Ethylene responsive element binding protein signature	133	153	IPR001471	GO:0003700\|GO:0006355
	Dere01g0468	179	Gene3D	AP2/ERF domain	92	153	IPR036955	GO:0003700\|GO:0006355
	Dere01g0468	179	PANTHER	DNA-BINDING DOMAIN	73	158	IPR044808	GO:0003700\|GO:0009873
	Dere01g0468	179	SUPERFAMILY	DNA-binding domain	93	153	IPR016177	GO:0003677
	Dere01g0468	179	ProSiteProfiles	AP2/ERF domain profile.	93	151	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere01g0468	Dere-ChrDere01	10305951	10306490	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere01g0468	1	177	AP2-EREBP Transcription Factor Family	AT5G07580	45.685	3.19e-43	141

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Dere01g0468		AP2	1.5e-14	CL0081