Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0462 ATGGCTGCTTCTTCCTCCGGCAATTCCGTTTTAACTTCTTCCTCTGCTTTACCTCACGAACTGTTGGATTACGATTCCCCTCTGAGAATTCCCCTCACATCCGATCAGGTCAAGTACTGCACGGAGGCGCTAACTTTCTTCAGGGGGAAGCTTCAGACGCCTTACAAGATCAGTCAAGAGTTTGCCCACTTGCAGGCCAATTGGATAACATCGAGTGAGATGAGAAGAAGATGCATTGTAGCTCTAGATGATGTAAATGTGAGCAAAAATCGGTATCCAGATGTCCTACCATTTGACAAGAACAGGATTGTTCTTGAATCAAGTACAGATTATAGGCCTACAGCCAAGGGATATATCAATGCAAGCTTTGTCTCGACCTCTTCCCCTGGCAGTGTTTCTCAGTTTATAGCTACACAAGGCCCACTGCCACATACTTATGAGGATTTCTGGGAAATGGTAATCCAATACCGCTGCCCTGCAATTGTGATGCTCACTAGGCTGGTCGACAATTATAAGATGGTAAAATGTGGAGATTATTTTCAAGCTGAAGATGGACCTAGAGAGTTTGGTAATATCTCTATTGTCAGTAAATGGATCAAAACTACTGAAACTTCACTGGTACTGCGGCATTTAGAGGTGAAGCATAAAGAGGCAGAGGATCCGCCCTTGTCTGTGTTTCATATTCAGTATCCTGAATGGCCAGACCATGGAGTTCCCAAAGATACATATACTGTGCGTGAAATTTTGAAAAGATTATACCATTTGCCTCCAAACCTTGGCCCAATAGTGGTGCACTGCAGTGCAGGTATTGGCAGAACTGGAACATACTGTGCAATTCATAACACAATTCAGAGAATCCTTGTCGGTGACATGTCTGCCTTGGATCTTGGTAATACCATAGCTGTCTTCAGGTCCCAGCGCATTGGAATGGTTCAGACTCAGGACCAGTACTTTTTCTGCTATAAAGCTATTGTAGACGAACTGGAAGAGCTTGTTTCTCTTCAGCAATGA 1011 0.4392 MAASSSGNSVLTSSSALPHELLDYDSPLRIPLTSDQVKYCTEALTFFRGKLQTPYKISQEFAHLQANWITSSEMRRRCIVALDDVNVSKNRYPDVLPFDKNRIVLESSTDYRPTAKGYINASFVSTSSPGSVSQFIATQGPLPHTYEDFWEMVIQYRCPAIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNISIVSKWIKTTETSLVLRHLEVKHKEAEDPPLSVFHIQYPEWPDHGVPKDTYTVREILKRLYHLPPNLGPIVVHCSAGIGRTGTYCAIHNTIQRILVGDMSALDLGNTIAVFRSQRIGMVQTQDQYFFCYKAIVDELEELVSLQQ 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0462 336 Gene3D Protein tyrosine phosphatase superfamily 34 329 IPR029021 -
Dere01g0462 336 CDD PTPc_plant_PTP1 118 321 - -
Dere01g0462 336 SMART PTPc_3 56 329 IPR000242 GO:0004725|GO:0006470
Dere01g0462 336 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 41 328 IPR029021 -
Dere01g0462 336 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 46 328 - -
Dere01g0462 336 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 246 318 IPR000387 GO:0016311|GO:0016791
Dere01g0462 336 FunFam Tyrosine-protein phosphatase non-receptor type 12 34 335 - -
Dere01g0462 336 SMART ptp_7 224 326 IPR003595 -
Dere01g0462 336 PRINTS Protein tyrosine phosphatase signature 117 124 IPR000242 GO:0004725|GO:0006470
Dere01g0462 336 PRINTS Protein tyrosine phosphatase signature 261 279 IPR000242 GO:0004725|GO:0006470
Dere01g0462 336 PRINTS Protein tyrosine phosphatase signature 294 309 IPR000242 GO:0004725|GO:0006470
Dere01g0462 336 PRINTS Protein tyrosine phosphatase signature 310 320 IPR000242 GO:0004725|GO:0006470
Dere01g0462 336 PRINTS Protein tyrosine phosphatase signature 135 155 IPR000242 GO:0004725|GO:0006470
Dere01g0462 336 PRINTS Protein tyrosine phosphatase signature 223 240 IPR000242 GO:0004725|GO:0006470
Dere01g0462 336 ProSitePatterns Tyrosine specific protein phosphatases active site. 264 274 IPR016130 GO:0016311|GO:0016791
Dere01g0462 336 ProSiteProfiles PTP type protein phosphatase domain profile. 57 327 IPR000242 GO:0004725|GO:0006470
Dere01g0462 336 Pfam Protein-tyrosine phosphatase 86 325 IPR000242 GO:0004725|GO:0006470
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0462 35 333 Protein tyrosine phosphatase (PTP) family AT1G71860 71.906 6.49e-166 464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g0462 01 10189165 10196612 Dere01g0462 01 10189165 10196612 ECH