Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0452 ATGATGCATCCAAAAGTGAGCCTATGTGCTAACACCCGGACAAGGTCGTGTTCCTTAATCTCCGCTCAGAATCAAATGCAGGCAAGTTTGTCACCTTATCCACCCTCTTTTCCAGATTTCGGTTTGCAGCATAGTCAACAGAGATGGGAAGATCCCTCTATTTCAGATTATGGTATCAGGATTGAAGCACCATTTAAAGAATTCAACCAAGCCTCTGGAACCCAGTCTTCGCTTCTGTGTGACTCCAACAATGAGTATAAGATCCCTGATCAAGAAAATTGTTCAATGGGTGATACATCACGAAGGGGTAAACTCCAAGATTGGGATCCCACTTTAATGTTGAAAAATCTTTCTTTCCTGGAAGAAAAGATTCATCAGCTCCAGGATCTGGTGCATTTGATTGATGGTCAGAAAGGGCAACAACTTGGACAACCTAATGAACTTGTGACTCAGGACAAGCAGCTTGTCACAGCCGATCTGACATCGATTATTGTTCAATTGATCTCTGCAGCAGGTAGTCTTCTTCCTTCTGTCAGGCACACTCCTACAAACACTAGTCCATCTGTTGGGCAACTTGGCCAGATTACTGGGATTACCTTTCCTTCTGGATTAGATCCGAGTAGCAGTATCCCGCCACAAGATAAAATATCTGATCAATCCAACCAGATTGATCTAACTAGTATGTGTGAAATGGAACAAAACTACAACATGGAAGAACATGAATCAAAAGATGAAGAGGATGTGGATGAGGGTGAGAACCTTCCACCGGGTTCCTATGAGATTTTACAGTTAGAAAAAGAAGAAATCCTTGCGCCTCACACGCACTTCTGTACGATATGTGGGAAGGGATTCAAGAGAGATGCAAATCTTCGGATGCATATGAGAGGCCATGGTGATGAGTACAAAACCCCGGAAGCACTTGCAAAACCTAATAAAGAATCTGTGTCTGAACCCAAGCTCATCAAGAGGTATTCCTGCCCCTATGCTGGTTGCAAGCGTAATAAGGAGCACAAGAAGTTTCAACCTCTGAAGACTATTTTATGTGTAAAAAACCATTACAAAAGAACACACTGCGACAAGAGTTACATTTGCAGCAGATGCCACACCAAGAAATTTTCAGTCTTGGCAGACCTTAAAACTCATGAAAAGCACTGCGGTAAGGATAAATGGCTTTGTTCATGTGGCACAACATTTTCAAGGAAAGACAAGCTTTTTGGGCACATTGCTCTGTTCCAAGGCCACACACCAGCAATACCCTTGGATGAATCAAAAGTACCTATAGGGCTAGCTGATCTGGAAAGCAAGGAAAAGAGTGACAAGGTAGTAAGCATAAACTCAAGCTTCGGATCAAATACTTTCAGTGGAAATGGAGTTCAAAAAATTATGGATGTGAAAGGCATTATTGACGATCCTATCAATTATCTCTCATCACTGAACTTCGAAACCAGTAACTTCGGTGAATTTATTGAATTTCCTCGCCCCGCTTTTGAAGACTCAGAGGATCCATTCCCTTTTCTCATGTCTGAATCTTTCAGTTATGCTCCTAAATCTGGAGAAGAATCAAGTTCTGACAATTTGTTGTGA 1584 0.4192 MMHPKVSLCANTRTRSCSLISAQNQMQASLSPYPPSFPDFGLQHSQQRWEDPSISDYGIRIEAPFKEFNQASGTQSSLLCDSNNEYKIPDQENCSMGDTSRRGKLQDWDPTLMLKNLSFLEEKIHQLQDLVHLIDGQKGQQLGQPNELVTQDKQLVTADLTSIIVQLISAAGSLLPSVRHTPTNTSPSVGQLGQITGITFPSGLDPSSSIPPQDKISDQSNQIDLTSMCEMEQNYNMEEHESKDEEDVDEGENLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPEALAKPNKESVSEPKLIKRYSCPYAGCKRNKEHKKFQPLKTILCVKNHYKRTHCDKSYICSRCHTKKFSVLADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDESKVPIGLADLESKEKSDKVVSINSSFGSNTFSGNGVQKIMDVKGIIDDPINYLSSLNFETSNFGEFIEFPRPAFEDSEDPFPFLMSESFSYAPKSGEESSSDNLL 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0452 527 Gene3D Classic Zinc Finger 259 330 - -
Dere01g0452 527 ProSitePatterns Zinc finger C2H2 type domain signature. 277 297 IPR013087 -
Dere01g0452 527 ProSiteProfiles Zinc finger C2H2 type domain profile. 275 302 IPR013087 -
Dere01g0452 527 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 92 493 IPR044300 GO:0010044|GO:0010447
Dere01g0452 527 SMART c2h2final6 362 384 IPR013087 -
Dere01g0452 527 SMART c2h2final6 275 297 IPR013087 -
Dere01g0452 527 SMART c2h2final6 324 357 IPR013087 -
Dere01g0452 527 SUPERFAMILY beta-beta-alpha zinc fingers 274 299 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0452 Dere-ChrDere01 10072784 10074367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0452 243 527 C2H2 Transcription Factor Family AT1G34370 69.416 9.84e-140 403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere01g0452 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g0452 01 10072784 10074367 Dere01g0452 01 10072784 10074367 ECH