Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0449 ATGGAAGATCCAGAGGAAGAGGAGCTTCTGAATCTTAGCCTTTCAGTTTCTGCAGGTAGGGAGAGGAAGAAGAAAGGGAAGATGATGACAAGAGATCATAACAGTTCCATATGCTATGAACAAGGGTTCGAAGGTAAGATCTTCAGACTGCTCCAAATGAGAGAGCAAATGCTCCGTCAAGACCACCACCACCTGAGAAGCCGAAAAGGAGTGGTGGAAGACGGTAATGGCCTCCCTCTAATCCACCTCCTCCTCAGCACCGCCACTTCCGTCGACGACACCAACATAAACTCCGCCCTCGACAACCTCACCCAGCTCTACCAGACCGTCTCCCTCACCGGCGACTCCGTCCAACGCGTCGTCGCCTACTTCGCCGACGGCCTCGCCGCGCGGCTTCTCACTCGGAAATCCCCCTTCTACGACATGCTCATGGAGGAACCCACAAGCGAGGAAGAGTTCTTAGCATTCACAGACCTCTACAGAGTCTCACCATACTACCAATTCGCTCACTTCACGGCCAACCAAGCTATCCTCGAAGCCTTCGAGAACGAGGAAGACAAAAACAATCGAGCATTACACGTCATCGACTTCGATGTCTCATACGGCTTTCAATGGCCTTCTCTGATCCAATCACTCTCCGAGAAAGCCACCAGCGGCAACCGGATATCCCTCAGAATCACAGGATTCGGAAAAAACCTCAAAGAGCTTCAAGAAACAGAATCGCGTTTAATCAGCTTCTCAAAGGGGTTCACCAATCTCGTGTTTGAATTCCAAGGCTTGCTTCGAGGCTCACGTGTGATTAACCTAAGAAAAAAAAAGAATGAAACAGTGGGAGTGAATTTGGTTTCTTACTTGAACACATTGAGTAGTTTCATGAAGATCTCTGACACATTGGGATTTGTTCATTCCCTCAACCCCTCCATTGTTGTGCTTGTCGAACAAGAAGGTAGTAGAAGTCCCAGAACCTTCTTGTCGAGATTCACTGATTCATTACACTATTTCGCGGCCATGTTCGATTCTCTGGACGATTGCTTACCGTTGGATAGCATGGAGAGGTTGAGGATAGAGAAGAAGCTTCTGGGGAAAGAGATCAAGGCCATGCTGAATTACTATGACGTGGACGGTGTGGATTGTCCCAAGTACGAGAGGATGGAGACGTGGAAGGCGAGGATGGAGAGTCATGGATTCAATGGCACGAAAGTGAGCTCGAAGGCTTTGATTCAAGCGAAGCTGCTTCTGAAGATGAGGACGCATTATTCTCCACTTCAGTTGGAGGATGAAGGAGGAGGAGGTGGAGGGTTCAGGGTTTCAGAGAGAGACGAAGGAAGAGCCATCTCTCTGGGATGGCAGAATAGATTTCTTCTCACAGTCTCGGCATGGCAGACAGTGTGA 1392 0.4914 MEDPEEEELLNLSLSVSAGRERKKKGKMMTRDHNSSICYEQGFEGKIFRLLQMREQMLRQDHHHLRSRKGVVEDGNGLPLIHLLLSTATSVDDTNINSALDNLTQLYQTVSLTGDSVQRVVAYFADGLAARLLTRKSPFYDMLMEEPTSEEEFLAFTDLYRVSPYYQFAHFTANQAILEAFENEEDKNNRALHVIDFDVSYGFQWPSLIQSLSEKATSGNRISLRITGFGKNLKELQETESRLISFSKGFTNLVFEFQGLLRGSRVINLRKKKNETVGVNLVSYLNTLSSFMKISDTLGFVHSLNPSIVVLVEQEGSRSPRTFLSRFTDSLHYFAAMFDSLDDCLPLDSMERLRIEKKLLGKEIKAMLNYYDVDGVDCPKYERMETWKARMESHGFNGTKVSSKALIQAKLLLKMRTHYSPLQLEDEGGGGGGFRVSERDEGRAISLGWQNRFLLTVSAWQTV 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0449 463 Pfam GRAS domain family 80 461 IPR005202 -
Dere01g0449 463 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 69 456 IPR005202 -
Dere01g0449 463 ProSiteProfiles GRAS family profile. 71 461 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0449 Dere-ChrDere01 10017286 10018677 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0449 76 461 GRAS Transcription Factor Family AT1G14920 34.085 1.10e-54 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Dere01g0449 GRAS 5.2e-90 CL0063