Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0443 ATGAACTTCACAGAGAACAATGGGCACGAGCTGGAAACTTTCCCTGACAATCACTATGACGATGCTTCCCTGAGAGCCATGATTCTATGCGCCGGTCAGGTAAACGCCGCCGTTTTGAATGCTGCGACGGAGCTCCACCTGTTTGATATCATTGCTGAATCTGAGGGAGTGGGTGGTTTTGTTTCGCCCATCGAAATCGCTTCCAGACTTCCCACACTAAATAATAATAATAATAATGCAGACGTTGTGGCACAAAGGCTGGTTCGAATGCTGCGTTTGCTGGTGGCTCACGAGCTTCTCACGTGCTCTGTGAGAACCATGGAAGATGGCAGCTCCCAGAGGCTCTATGCTCTCTCTCCCACTGGCCAATACTTCGTCTCAAATGAAGATGGTGCTTCTTGGGCTTCCTTGATGCCCGGTATCTCCTATCATCCTCACATGTCACAGATTTTTCTAAACTTGAAGGATGCAATACTTAATAGTGGCGATGACCTAAGCAAGATAGTTCATGGGAAGACTGTGTATGAGTACATGGAGACGGATCCTGTGATGAAACACAAGTTCCATAGGGCAATGGCTGATATCTCTGCATTACACATGGAGAAGGTTCTTGAGATATACAAAGGCTTTGAGGGATTGTCGACGCTTGTCGATGTGGCAGGTGGTATTGGGCAATCCCTCAAAATCATTACATCCAAGTACCGTTCAATTATGGGCATTAATTTTGATATGCCCCATGTGATTCAAGATGCCCCTACCTATCCAGGAATAAAGCATGTTGGAGGAGACATGTTCGAAAGTGCTCCTGAAGGCGATGCTATAATGATAAAGGGAACAACTCATAATTGGTCAGATGAAAAATGCATAAAGATTTTCAGAAATTGCCACAAGGCCTTGAATGAAGGTGGGAAGGTCATTGTGATAGACTTGATAATGCCAGAAGAGCCAGAGATAAACAATGCTGCCAAATCTGTTTCCATCTCTGACGTTGTCATGTTCTCACAAGGAGGAGGAATGGAAAGAACTGAGAAGCAGTTTGAGGCTTTATGCAAGAGATCAGGATTTTCTGGCTTTCAAGTTGCTTGTCGTGTTTTATCTATTTTAGGAGTCATGGAGTTTTACAAATAA 1128 0.4433 MNFTENNGHELETFPDNHYDDASLRAMILCAGQVNAAVLNAATELHLFDIIAESEGVGGFVSPIEIASRLPTLNNNNNNADVVAQRLVRMLRLLVAHELLTCSVRTMEDGSSQRLYALSPTGQYFVSNEDGASWASLMPGISYHPHMSQIFLNLKDAILNSGDDLSKIVHGKTVYEYMETDPVMKHKFHRAMADISALHMEKVLEIYKGFEGLSTLVDVAGGIGQSLKIITSKYRSIMGINFDMPHVIQDAPTYPGIKHVGGDMFESAPEGDAIMIKGTTHNWSDEKCIKIFRNCHKALNEGGKVIVIDLIMPEEPEINNAAKSVSISDVVMFSQGGGMERTEKQFEALCKRSGFSGFQVACRVLSILGVMEFYK 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0443 375 Gene3D Vaccinia Virus protein VP39 127 375 IPR029063 -
Dere01g0443 375 Pfam Dimerisation domain 38 95 IPR012967 GO:0046983
Dere01g0443 375 Pfam O-methyltransferase domain 152 356 IPR001077 GO:0008171
Dere01g0443 375 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 141 370 IPR029063 -
Dere01g0443 375 Gene3D - 4 125 IPR036388 -
Dere01g0443 375 FunFam Caffeic acid 3-O-methyltransferase 6 125 - -
Dere01g0443 375 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 27 375 IPR016461 GO:0008168
Dere01g0443 375 SUPERFAMILY "Winged helix" DNA-binding domain 19 130 IPR036390 -
Dere01g0443 375 PANTHER O-METHYLTRANSFERASE 31 373 IPR016461 GO:0008168
Dere01g0443 375 PIRSF O-mtase 5 375 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0443 Dere-ChrDere01 9695028 9697394 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0443 20 367 Monolignol Biosynthesis Gene Families AT5G54160 46.418 7.93e-103 306