Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0423 ATGGGGACTTCAAATCTTCTTGTATTTTTCTTCTTCTCTGTGGTGGCTGCGTGCTCTATGGCAGTGGCCAAGGTGGTGCTGATTGGGAGCAACGTCACTCTATCCTTTGACGATATTGAAGCTAATTTTGCTCCAACGATGAAAGGTTCTGGAGAATGTGGGGTCTTGTATGTGGCAGAGCCGCTTGAAGCTTGTACAGCACTGACAAATAAAGCTGAACAGCTTTCAAATGGAACTTCCTCTTTTGTTTTAACAATTAGAGGGGGATGCAGCTTTGAAGAAAAGGTCAGAAGAGCACAAAAGGCCGGTTTCAAAGCTGCAATTATCTATGACAATGAAGATGACGGTGTCTTAGTTGCTATGGCAGGAGATTCAAGTGGTATAAAAATACATGCAGTATTTGTATCTAAAGCTTCTGGTGAAATACTGAAGAGATACGCTGGAATGACTAACATTGAACTGTGGCTAATTCCAAGTTTTGAAAACTCTGCATGGTCTATCATGGCAATTTCCTTCATTTCCCTCCTAGCGATGTCAGCAGTTCTGGCCACTTGTTTCTTTGTCCGCAGGCATCGTATACGCAGAGAAAGGCCTCGAGTTTCTCATGTTCGTGAATTTCATGGGATGAGTAGTCGCCTAGTGAAAGCAATGCCTAGTTTGATATTTACTGCTGTTTTAGAGGATAACTGTACATCAAGAACATGTGCAATATGCCTTGAAGACTATTGCGTTGGAGAGAGGCTCAGGATTCTGCCCTGCTGTCACAAGTTTCATGCCAACTGCGTGGATTCTTGGCTTACTTCATGGAGAACCTTCTGTCCAGTTTGTAAGCGTGATGCAAGAACTGGTCTAGCTGATCCACCACCTTCAGAATCCACACCTTTGCTTTCATCCAACCCATCTGGAGCATCTTCTGTAGTATCATCTGTGAGATCATCATTAGCATCATCTTCAGCAATACAAATTTCCCGGGCTTCATCACGCTCCCCATCTGTTTCTCGTAACCACTCCCTGGCTAGTACTCCCTACGTTCAGCCATCACTTAGGTCCTACCACCAATCTCCCTCCATAAGTTTCAGCAGAAGCTCGGTAGATCTTAGGAACGCATCCCAAAGATCTCAAGCTTCACATGTAAACTCTCCACGTTCCATGGGTTACCCATCCTTGTCATCAATGAACTCAAGGTTCATGTCTCCACATATTCAAAGTCTAGGCAATGCTTCAGCAAGTTACATTGGTTCTTCTAGTCATCAGCACCACCCTCTTCGTTATAGTGAGTCAGCTACAAGTTTTTCCCCATTTGCTTCTGCCCAGTCCCTTCCGGAATGCTGA 1332 0.4444 MGTSNLLVFFFFSVVAACSMAVAKVVLIGSNVTLSFDDIEANFAPTMKGSGECGVLYVAEPLEACTALTNKAEQLSNGTSSFVLTIRGGCSFEEKVRRAQKAGFKAAIIYDNEDDGVLVAMAGDSSGIKIHAVFVSKASGEILKRYAGMTNIELWLIPSFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRRERPRVSHVREFHGMSSRLVKAMPSLIFTAVLEDNCTSRTCAICLEDYCVGERLRILPCCHKFHANCVDSWLTSWRTFCPVCKRDARTGLADPPPSESTPLLSSNPSGASSVVSSVRSSLASSSAIQISRASSRSPSVSRNHSLASTPYVQPSLRSYHQSPSISFSRSSVDLRNASQRSQASHVNSPRSMGYPSLSSMNSRFMSPHIQSLGNASASYIGSSSHQHHPLRYSESATSFSPFASAQSLPEC 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0423 443 SUPERFAMILY PA domain 81 147 IPR046450 -
Dere01g0423 443 ProSiteProfiles Zinc finger RING-type profile. 235 277 IPR001841 -
Dere01g0423 443 MobiDBLite consensus disorder prediction 411 430 - -
Dere01g0423 443 CDD PA_C_RZF_like 9 164 IPR044744 -
Dere01g0423 443 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 195 282 - -
Dere01g0423 443 Pfam PA domain 63 143 IPR003137 -
Dere01g0423 443 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 159 292 - -
Dere01g0423 443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 282 IPR013083 -
Dere01g0423 443 Gene3D - 24 156 - -
Dere01g0423 443 SMART ring_2 235 276 IPR001841 -
Dere01g0423 443 MobiDBLite consensus disorder prediction 362 391 - -
Dere01g0423 443 Pfam Ring finger domain 234 277 IPR001841 -
Dere01g0423 443 SUPERFAMILY RING/U-box 225 288 - -
Dere01g0423 443 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 23 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0423 Dere-ChrDere01 9311318 9317676 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0423 23 442 C3H Transcription Factor Family AT1G22670 48.140 2.02e-116 345