Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0417 ATGATAAATAGGTTCCTTGGTGGTACAGCTCCCTATTGCAAGAGGGTTTTGACAGCAAATCCAGATACAGCTATGTCTGGCAGCACAAGTTGCACTGTTTACATAGGCAATCTAGATGAGAGGGTGACCGACAGGGTCTTGTATGATATTTTAATTCAAGCAGGACAAGTGGTGGACCTGTATATTCCTAGAGATAAGGAATCTGAGAAGCCTAAAGGATATGCCTTTGCTGAATATGAAACTGAGGAGATTGCAGATTATGCTGTCAGGCTTTTCTCAGGCCTTGTGACTCTCTATAACAGAACACTGAAGTTTGCGATATCTGGGCAAGACAAACCTACTCCAAATGGTTCTACAGCAGCTACACCTTCATCTAATTCTTCTCACCGATCAAAGCCTTACCCTGTGCCAATAAATAATACAGAAATTTCTCAGCACTCTGCTAGGCTATCAACACCTAGCCGATATTCAGATTATCCTGCAAATTACTCTCGAGTCACCCATCGGGTAGTTGACCAATCTAGTGGGTATGGATCACTCTCCAATAGCAACGACTATGAATACAGTCGAAGAGTATTTGGACCAACATTGGATAGCATTAGCCGTTCTAGGTCACGCCGCTATGATACAACATTACTTACCTGCAAATGTGCTTTTCAGGAATGGCCGATGAAACCTCATAGTACAGTCTATATCTTCAGGAAATTTGCCAAGACATCTCGAATGTTTGGGCAACCTGTTTGA 744 0.4261 MINRFLGGTAPYCKRVLTANPDTAMSGSTSCTVYIGNLDERVTDRVLYDILIQAGQVVDLYIPRDKESEKPKGYAFAEYETEEIADYAVRLFSGLVTLYNRTLKFAISGQDKPTPNGSTAATPSSNSSHRSKPYPVPINNTEISQHSARLSTPSRYSDYPANYSRVTHRVVDQSSGYGSLSNSNDYEYSRRVFGPTLDSISRSRSRRYDTTLLTCKCAFQEWPMKPHSTVYIFRKFAKTSRMFGQPV 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0417 247 SUPERFAMILY RNA-binding domain, RBD 22 110 IPR035979 GO:0003676
Dere01g0417 247 MobiDBLite consensus disorder prediction 109 156 - -
Dere01g0417 247 SMART rrm1_1 32 106 IPR000504 GO:0003723
Dere01g0417 247 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 33 104 IPR000504 GO:0003723
Dere01g0417 247 PANTHER RNA BINDING MOTIF RBM PROTEIN -RELATED 25 210 - -
Dere01g0417 247 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 31 110 IPR000504 GO:0003723
Dere01g0417 247 Gene3D - 24 116 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0417 Dere-ChrDere01 9247831 9252865 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0417 27 111 Eukaryotic Initiation Factors Gene Family AT1G49760 34.118 2.59e-07 49.3