Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0411 ATGGAGTACAAACTCAAACCCACTATGATCTCCAACTCTTCCCCCTCTTCCTCTCCGTCTCCTCCTTCACAGCCTCAGTCGCCGCCGTCCCCTCCTCCGCCGCCACCGCCGGTGGTGGTTTCGCCTTGCGCCGCCTGCAAGATCCTCCGACGCCGCTGCGTCGAGAAGTGCGTGTTGGCCCCCTATTTCCCCCCGACGGATCCACTCAAGTTCACCATTGCGCACAGAGTCTTCGGAGCCAGCAACATCATCAAGTTCTTGCAGGAACTTCCGGAGTCTCAGAGAGCAGATGCTGTGAGCAGCATGGTGTACGAAGCAAATGCGAGGATAAGAGACCCAGTGTATGGATGTGCAGGAGCAATATGCCAGCTTCAGAAGCAAGTGAGCGAGCTGCAAGCTCAATTAGCCAAAGCGCAAGCCGAGCTGGTGAACATGCAGTGCCAGCAAGCCAATTTGGTGGCGCTAATTTGCATGGAAATGAGCCAATCTAATCAAGAGCCGCACATGATGATGATGGCGGCAGCTCAGCCGGCTCAGCCGCCACAGCTCGTCGATACAAGCTGCTTCTTAGATGACAACAACAGCTTCGGCTCGGCTTGGGCTTGGGAGCCTCTCTGGACATAA 624 0.5609 MEYKLKPTMISNSSPSSSPSPPSQPQSPPSPPPPPPPVVVSPCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAELVNMQCQQANLVALICMEMSQSNQEPHMMMMAAAQPAQPPQLVDTSCFLDDNNSFGSAWAWEPLWT 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0411 207 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 41 171 - -
Dere01g0411 207 MobiDBLite consensus disorder prediction 1 36 - -
Dere01g0411 207 ProSiteProfiles LOB domain profile. 41 142 IPR004883 -
Dere01g0411 207 MobiDBLite consensus disorder prediction 18 36 - -
Dere01g0411 207 Pfam Lateral organ boundaries (LOB) domain 42 139 IPR004883 -
Dere01g0411 207 Coils Coil 121 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0411 Dere-ChrDere01 9171338 9172493 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0411 38 207 AS2 family AT1G07900 67.647 4.57e-77 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Dere01g0411 LOB 2.3e-41 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g0411 01 9171338 9172493 Dere01g0411 01 9171338 9172493 ECH