Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0393 ATGGGTTATTCTCAGTTCTACGTTGTTTCACTTTTAGCAATTTCTGTTGAAATTTGTTTAGCCTCCTCCCCTGTCGAAGATCAAAAGAGAGATAAGATAACCCGTTTACCAGGACAGCCAAAAAATGTAGGATTTGCTCAGTACTCTGGTTATGTGACTGTGAGTGAGCAAGCTGGGAGGGCATTATTTTACTGGTTGATTGAGTCACCTGCAAGTCGTGGACCTGAGTCCAGGCCACTTGTTTTGTGGCTTAATGGCGGTCCGGGATGTTCCTCTATTGCTTATGGTGCAGCTGAAGAGATTGGCCCTTTTCGAATTAGTCGTGATGGGAGGTCACTTTACTTGAATCCGTATGCCTGGAACAATTTGGCCAATATACTTTTCCTTGAGTCTCCAGCTGGTGTTGGTTTTTCATATTCCAATGAAACATCAGATCTGCACACAGTGGGTGACCAGAGAACAGCTGAAGATGCTTATACATTTCTTGTTAATTGGTTTGAAAGATTTCCTCAATATAAGCATAGAGAATTTTACATTGCTGGAGAAAGTTATGCAGGTCACTATGTTCCTCAGTTGGCTCAACTTGTTTACCAGAAAAATAAGGGAGTCCAGAAGCCGGTTATAAATTTTAAAGGATTTCTGGTTGGAAACGCTGTCACTGATGATTACCATGATTATGTTGGCACATTCGAGTACTGGTGGACCCATGGTTTGATTTCAGATTCCTCATATAAGATGCTACAAATTGCCTGTGACTTTGGGTCCTCCCAGCATCCATCAACACAGTGCACGGAGGCTCTACAAGTTGCAGTTTTGGAGCAGGGAAACATTGACCCATATAGCATATATACGCGGCCGTGCAGTGATACTGCATCACTCAAACGCAGTTTGGGTGGCCGCTACCCATGGATGTCTCGAGCATATGATCCTTGTACTGAGAGATATTCAGACTTGTACTTCAACCATCCTGAAGTTCAAAAGGCACTCCATGCCAATGTAACTAATATCTCATATTCATGGAAGACATGCAGTGATATTGTTGCAAACTACTGGGCGGATTCTCCACTATCTATGCTTCCAATATATCAAGAACTCATTGATGCTGGTCTCAAGATATGGGTATATAGTGGAGACACAGATTCCGTGGTTCCGGTAACTGCCACTCGATATTCCATTGCTGCCTTGAATCTTCCTACCATAATCAATTGGTACCCTTGGTATGATAATGGCAAGGTTGGTGGTTGGAGCCAAGTTTATAAAGGGCTTACGTTGGTTACAGTAACAGGAGCTGGACATGAAGTTGCAGTTCTTCGGCCTCGCCAAGCTTTCATTCTTTTCAGGTCATTCTTGGAGAACAAGCCCATGCCAAGTTAA 1374 0.4316 MGYSQFYVVSLLAISVEICLASSPVEDQKRDKITRLPGQPKNVGFAQYSGYVTVSEQAGRALFYWLIESPASRGPESRPLVLWLNGGPGCSSIAYGAAEEIGPFRISRDGRSLYLNPYAWNNLANILFLESPAGVGFSYSNETSDLHTVGDQRTAEDAYTFLVNWFERFPQYKHREFYIAGESYAGHYVPQLAQLVYQKNKGVQKPVINFKGFLVGNAVTDDYHDYVGTFEYWWTHGLISDSSYKMLQIACDFGSSQHPSTQCTEALQVAVLEQGNIDPYSIYTRPCSDTASLKRSLGGRYPWMSRAYDPCTERYSDLYFNHPEVQKALHANVTNISYSWKTCSDIVANYWADSPLSMLPIYQELIDAGLKIWVYSGDTDSVVPVTATRYSIAALNLPTIINWYPWYDNGKVGGWSQVYKGLTLVTVTGAGHEVAVLRPRQAFILFRSFLENKPMPS 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0393 457 Gene3D - 358 451 - -
Dere01g0393 457 ProSitePatterns Serine carboxypeptidases, serine active site. 179 186 IPR018202 GO:0004185
Dere01g0393 457 Pfam Serine carboxypeptidase 37 452 IPR001563 GO:0004185|GO:0006508
Dere01g0393 457 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 32 435 IPR001563 GO:0004185|GO:0006508
Dere01g0393 457 FunFam Carboxypeptidase 27 289 - -
Dere01g0393 457 PRINTS Carboxypeptidase C serine protease (S10) family signature 129 139 IPR001563 GO:0004185|GO:0006508
Dere01g0393 457 PRINTS Carboxypeptidase C serine protease (S10) family signature 116 128 IPR001563 GO:0004185|GO:0006508
Dere01g0393 457 PRINTS Carboxypeptidase C serine protease (S10) family signature 422 435 IPR001563 GO:0004185|GO:0006508
Dere01g0393 457 PRINTS Carboxypeptidase C serine protease (S10) family signature 165 190 IPR001563 GO:0004185|GO:0006508
Dere01g0393 457 SUPERFAMILY alpha/beta-Hydrolases 29 455 IPR029058 -
Dere01g0393 457 Gene3D - 311 348 - -
Dere01g0393 457 FunFam Carboxypeptidase 358 452 - -
Dere01g0393 457 Gene3D alpha/beta hydrolase 25 297 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0393 Dere-ChrDere01 8939911 8945407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0393 321 455 Calmodulin-binding Proteins AT2G22960 30.882 1.94e-15 72.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g0393 01 8939911 8945407 Dere01g0393 01 8939911 8945407 ECH