Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0368 ATGTTTGTGGTTATGGATGAGAGGGTCTCCTCTGAAAAGTGCTTAGATTCTCAATTATGGCACGCCTGTGCTGGTACCATGGTTCAAATGCCTCCCATCAATTCAAAGGTCTTCTACTTTCCTCAGGGCCACGCAGAGCACGCCCAAGGGAAAGTAGATTTCGGGTCAACACGAATTCCTTCTTCCATTCCTTGCAGGGTCTCTGGTATGAAATACATGGCAGACCCAGACACAGATGAGGTGTTTGTGAAAATGAGGCTGACCCCTCTTAGAGAAAATGAAATGGGTTTTGAAGATGATTCTTTCCTGGGAAACAATGGATTAGAGGGTCAAGAAAAGCCGGCTTCTTTTGCAAAGACGTTGACACAATCTGATGCCAATAATGGTGGGGGTTTCTCTGTGCCTCGTTACTGCGCAGAGACTATCTTTCCAAGGTTGGATTATTCTGCAGAACCTCCAGTTCAGACCATTATTGCCAAGGATGTGCATGGTCAGAACTGGAAGTTTAGGCATATCTATAGAGGGACCCCTCGCCGGCACCTTTTAACAACCGGATGGAGCAATTTTGTGAACCAGAAGAGGCTTGTTGCTGGAGATTCTATAGTGTTTTTGAGGGCTGAGAATGGTGATCTTTGTGTTGGGATAAGGAGGGCTAAGAAGGAGATTGGTGGTGGAATTGAATATTCATCTGGTTGGAACCACGCTGTCCCACTTTTTGGTGGGAATTCAGGTTTTCTGTGTGAGGATGAAAACTCACTGTTAAGGAGAAAATGTCATGAGGAGTTGAAGGGAAGAGTGGCAGTTGAATCTGTTATTGAAGCTGTAAATTCTGCGGTTAGTGGCCGGCCCTTTGAGGTTGTCTACTATCCGCGCGCCAGCACACCAGAGTTCTGCATTAAGGCCTCTTTGGTGAGGGCTGCAATGCAAATACAGTGGTGTTCCGGGATGAGATTCAAAATGCCTTTTGAAACTGAGGACTCATCCAGGATAAGCTGGTTCATGGGAACAATATCGTCGGTTCAGGTTGCAGATCCCATTCGTTGGCCTGATTCTCCATGGCGTCTTCTACAGGTAGCGTGGGATGAACCTGATTTACTTCAGAATGTCAAGTGTGTTAACCCTTGGTTGGTTGAACTGGTCTCAAACATGCCAACCTTCCATCTCTCACCATTCTCACCACCAAGAAAGAAATCACGGTTTCTACAGCACGCAGATTTTCCCCTCATCAACCAACTTCCCGTGCCACCGTTCTCTGGAAACCTCTTCAATCAAACTAACTCCCCATGTAACATTCAAGACCATTATAGTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAATTTGGACTATCTCCATGTGAATTCCCTTTCAACAAGCTGCAATCAGATATGCTTCTAGACAGATTTCCAAGGCTTGACCATCCAGTCCAGCCCGCTAGACCTCCTCGTGGTCCCTACAAGAGCACCTCAACGAACAATGCTGATATATCTTGCTTGTTGACCGTAGGAAATCACAGCCCGAGCTTGAAGGAACCAATTGAGGCCAAAGCGCCCCACATCTTGTTGTTTGGTCAACTCATTCACACTAACCAGCAGAGTTCAAATAGTAGCTCTGCTAGTACAACCGGAAATAGTTCATCAGAAGGAAATTTACAGAAGGCATGGAATGTTGTTTCTGACGGATCGGGTTCTGCCTTGCATCAGAACAGTCCAACAGAGAATTCCTCTGAAGGAGGGTCTCCCTGGTACAAAAAGCAGAGCAATTCTGATCTTGGAACGGAAAATGTTAACGTCTTGTGTTTGGCTTTATAG 1812 0.4625 MFVVMDERVSSEKCLDSQLWHACAGTMVQMPPINSKVFYFPQGHAEHAQGKVDFGSTRIPSSIPCRVSGMKYMADPDTDEVFVKMRLTPLRENEMGFEDDSFLGNNGLEGQEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTIIAKDVHGQNWKFRHIYRGTPRRHLLTTGWSNFVNQKRLVAGDSIVFLRAENGDLCVGIRRAKKEIGGGIEYSSGWNHAVPLFGGNSGFLCEDENSLLRRKCHEELKGRVAVESVIEAVNSAVSGRPFEVVYYPRASTPEFCIKASLVRAAMQIQWCSGMRFKMPFETEDSSRISWFMGTISSVQVADPIRWPDSPWRLLQVAWDEPDLLQNVKCVNPWLVELVSNMPTFHLSPFSPPRKKSRFLQHADFPLINQLPVPPFSGNLFNQTNSPCNIQDHYSPAGIQGARHAQFGLSPCEFPFNKLQSDMLLDRFPRLDHPVQPARPPRGPYKSTSTNNADISCLLTVGNHSPSLKEPIEAKAPHILLFGQLIHTNQQSSNSSSASTTGNSSSEGNLQKAWNVVSDGSGSALHQNSPTENSSEGGSPWYKKQSNSDLGTENVNVLCLAL 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0368 603 Gene3D - 115 219 IPR015300 -
Dere01g0368 603 SMART B3_2 117 219 IPR003340 GO:0003677
Dere01g0368 603 MobiDBLite consensus disorder prediction 561 589 - -
Dere01g0368 603 FunFam Auxin response factor 115 219 - -
Dere01g0368 603 ProSiteProfiles B3 DNA-binding domain profile. 117 219 IPR003340 GO:0003677
Dere01g0368 603 SUPERFAMILY DNA-binding pseudobarrel domain 110 219 IPR015300 -
Dere01g0368 603 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 12 551 IPR044835 GO:0003677|GO:0006355|GO:0009725
Dere01g0368 603 FunFam Auxin response factor 312 385 - -
Dere01g0368 603 CDD B3_DNA 116 217 IPR003340 GO:0003677
Dere01g0368 603 Gene3D - 312 385 - -
Dere01g0368 603 Pfam Auxin response factor 274 357 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Dere01g0368 603 Pfam B3 DNA binding domain 117 218 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0368 Dere-ChrDere01 8537786 8540038 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0368 11 585 B3 DNA Binding Superfamily AT4G30080 59.044 0.0 620
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Dere01g0368 B3 4.4e-22 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g0368 01 8537786 8540038 Dere01g0368 01 8537786 8540038 ECH