Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0367 ATGATCGGACCCAATTTCATCGATGAGATAGACTGCGGCAGCTTCTTCGACCACATTGACGATCTCCTCGATTTCCCCGCCGAAGACGTCGACGCCGCTGCCTTGCCGGCCACCGCCGTGAACTGCAACTCGTTCCCGAGCATCTGGCCCGGAGAGTCAGACTCGTTGCCTGGCTCCGACTCGGTTTTCTCCGGCAACACCGCGTCGGACCTCTCGGCGGAGCTCTCAGTTCCGTATGAAGACATTGTCCAATTGGAATGGCTTTCAAGTTTTGTGGAGGACTCGTTCTCTGGTGGAAGCCTCACCATGAAGAAAGTGGAGCCATCTCGCACCAACAATAACGACTCAGCACATAACCAATTCCAGACATCAAGCCCGGTTTCTGTCCTGGAAAGCAGCAGCTCCTGCTCTGGGGAGAAGCCAGTGTCGGCGCCACCTCGGAGCCCGCCGGAAATGGTTGTCCCTGTGCCTTGTGGTGGACGTGCACGCAGCAAGCGTCCTCGCCCCGCCACTTTCAAGCCTCGTCCTGCTATGCAACTCATATCCCCCGCATCCTCCGTTGGTGAAAACACACAGCGAAATTCCGATTCTGAGAATTTTGTCGAGTCTCATCCGGTTGTGATCAAGATACCGAAACAAACTTCTGGGGAGCACAAGAAGAAGAAGAAGATCAAACTGTCATGTCCATTAGGTCCTGCTGATACGAATCAGCAGAATGTATCATCACAAGCAGTGAGGAAATGTATGCATTGTGAGATAACTAAGACACCACAATGGAGGGCAGGGCCAATGGGGCCGAAAACCCTATGCAATGCTTGTGGGGTTCGTTACAAATCAGGGAGGCTATTCCCAGAGTACAGACCTGCTGCTAGTCCAACTTTTTGCCCATCATTGCACTCCAATTCTCATAAGAAGGTGCTTGAAATGAGAAACAAAGCACCCCTTTCAGCTGCCTCGCCAGAGCTCATTCCAAACACTGACATCAACCTTACCCTGGAATACATGGATGGAATGGGTGGGGGGAATAGGATCAATAGATGA 1041 0.5226 MIGPNFIDEIDCGSFFDHIDDLLDFPAEDVDAAALPATAVNCNSFPSIWPGESDSLPGSDSVFSGNTASDLSAELSVPYEDIVQLEWLSSFVEDSFSGGSLTMKKVEPSRTNNNDSAHNQFQTSSPVSVLESSSSCSGEKPVSAPPRSPPEMVVPVPCGGRARSKRPRPATFKPRPAMQLISPASSVGENTQRNSDSENFVESHPVVIKIPKQTSGEHKKKKKIKLSCPLGPADTNQQNVSSQAVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCPSLHSNSHKKVLEMRNKAPLSAASPELIPNTDINLTLEYMDGMGGGNRINR 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0367 346 PANTHER GATA TRANSCRIPTION FACTOR 16 316 - -
Dere01g0367 346 FunFam GATA transcription factor 237 322 - -
Dere01g0367 346 CDD ZnF_GATA 247 294 IPR000679 GO:0006355|GO:0043565
Dere01g0367 346 PIRSF Txn_fac_GATA_plant 3 328 IPR016679 GO:0003677|GO:0005634|GO:0045893
Dere01g0367 346 ProSiteProfiles GATA-type zinc finger domain profile. 242 278 IPR000679 GO:0006355|GO:0043565
Dere01g0367 346 SMART GATA_3 242 292 IPR000679 GO:0006355|GO:0043565
Dere01g0367 346 Pfam GATA zinc finger 248 281 IPR000679 GO:0006355|GO:0043565
Dere01g0367 346 ProSitePatterns GATA-type zinc finger domain. 248 273 IPR000679 GO:0006355|GO:0043565
Dere01g0367 346 MobiDBLite consensus disorder prediction 103 141 - -
Dere01g0367 346 MobiDBLite consensus disorder prediction 103 173 - -
Dere01g0367 346 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 246 305 - -
Dere01g0367 346 Gene3D - 242 292 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0367 Dere-ChrDere01 8521797 8523130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0367 19 315 C2C2-Gata Transcription Factor Family AT4G32890 35.667 2.17e-43 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Dere01g0367 GATA 5.9e-15 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g0367 01 8521797 8523130 Dere01g0367 01 8521797 8523130 ECH