Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0360 ATGGAATATTCCAAGGTTAATGGTAAGAATGGCGGTTTGGAGCTTTGCAATGGCAGTGGCACTGTTGGTGGTGGTGGTAATGATCCGTTGAACTGGGGAATGGCAGCAGAGTCTCTGAAGGGAAGCCATTTAGAGGAGGTGAAGCGGATGGTGGAGGAGTACCGGAAGCCGGTGGTGCGCCTCGCCGGGAAGAGCCTCACGATATCGCAGGTGGCGGCGATCGCCACCCATGACGCCGGCGTGACTGTGGAGCTGTCGGAGGAGGCTCGCCCCGCCGTGAAAGCCAGCAGCGACTGGGTCATGGAAAGCATGAACAAAGGCACTGACAGTTATGGGGTCACCACCGGCTTCGGTGCCACGTCACACCGGAGAACCAAGCAGGGCGGAGCCCTCCAGAAGGAGCTTATAAGATTTTTGAATGCTGGCATCTTTGGGAATGGCACAGAATCCTGCCAGACCTTGCCTCACACGGCCACGAGAGCAGCCATGCTGGTTCGAATCAACACACTTCTTCAAGGATACTCGGGCATCAGATTTGGGATATTGGAAGCCATAACCAGGTTTCTGAACCACAACATAACCCCATGCCTTCCTCTCAGAGGCACCATTACAGCATCAGGTGACCTCGTACCTCTGTCCTACGTTGCTGGCCTGTTGACTGGCAGGCCCAACTCCAAATCCGTAGGTCCTGATGGTAAAATTCTCTCTGCTAAAGAGGCCTTTGAACTTGCTGGAATCGATGGTGGTTTCTTTGAATTGCAACCCAAAGAGGGTTTGGCTCTTGTTAATGGTACTGCAGTGGGATCTGGCTTAGCTTCCATGGTTCTTTTTGAAGCAAACATTCTGGGTGTTCTGTCGGAAGTGTTGTCAGCAATTTTTGCTGAGGTTATGCAAGGAAAGCCAGAGTTCACCGACCACTTGACACATAAACTGAAACACCACCCTGGCCAAATTGAGGCTGCTGCTATAATGGAGCACATTTTAGATGGAAGCTCTTACGTTAAAGCAGCACAGAAGCTTCATGAGATTGATCCTCTTCAGAAGCCTAAACAGGACAGATATGCTCTGAGAACATCTCCTCAGTGGCTTGGACCTCAGATTGAAGTTATCAGGCAAGCGACCAAGATGATCGAGAGGGAGATCAACTCTGTGAACGACAACCCATTGATTGACGTTTCAAGGAACAAGGCACTTCATGGAGGAAACTTCCAGGGGACCCCAATTGGTGTTTCAATGGACAACACTCGCTTGGCCCTTGCTTCGATTGGTAAACTCATGTTTGCTCAATTCTCTGAGCTTGTGAATGACTTGTACAACAATGGGTTGCCTTCAAATCTCACTGCGAGCCGAAACCCCAGCTTGGATTACGGCTTCAAAGGAGCTGAAATCGCCATGGCTTCCTACTGCTCAGAGCTTCAGTTCCTTGCCAATCCTGTCACAAACCATGTCCAGAGTGCAGAGCAACACAACCAAGATGTGAACTCTTTGGGCCTAATTTCCTCAAGAAAAACAGCTGAAGCTGTGGAAATACTGAAGCTCATGTCCTCAACTTTCTTAGTTGCATTATGCCAGGCCATTGATCTGAGGCATTTGGAAGAAAACTTGAAGAGCACTGTGAAGAACACTGTGAGCCAGGTGGCCAAGAGGGTCCTGACAATGGGTGTGAATGGTGAATTACACCCTTCAAGATTCTCTGAAAAAGACTTGCTCAAGGTGGTGGACCGTGAGTATGTGTTTGCCTACATTGATGATCCTTGCAGTGCAACATACCCATTAATGCAGAAGCTGAGACAGGTCCTGGTCGATCATGCTCTGGAAAATGGTGATAGGGAAAAGAACTCAAGCACCTCTATCTTCTTGAAGATAGGAGCTTTTGAGGAAGAGCTCAAGACCCTTTTGCCCAAAGAAGTAGAAAATGCAAGGATTGAGGTTGAGAATGGAAACCCTGTTATTCCCAACAGAATTAAGGAATGCAGGTCTTACCCACTGTACAGATTTGTGAGAGAAGAACTTGGTACTGATTTGCTCACAGGTGAGAAAGTGAGGTCACCTGGTGAAGAATTTGACAAGTTGTTCTCTGCAATGTGTGAAGGGAAGTTGATTGATCCTTTGTTGGAGTGCCTCAAGGAGTGGAATGGTGCTCCTCTGCCAATATGTTAG 2160 0.4861 MEYSKVNGKNGGLELCNGSGTVGGGGNDPLNWGMAAESLKGSHLEEVKRMVEEYRKPVVRLAGKSLTISQVAAIATHDAGVTVELSEEARPAVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESCQTLPHTATRAAMLVRINTLLQGYSGIRFGILEAITRFLNHNITPCLPLRGTITASGDLVPLSYVAGLLTGRPNSKSVGPDGKILSAKEAFELAGIDGGFFELQPKEGLALVNGTAVGSGLASMVLFEANILGVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAQKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRQATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDLYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVEILKLMSSTFLVALCQAIDLRHLEENLKSTVKNTVSQVAKRVLTMGVNGELHPSRFSEKDLLKVVDREYVFAYIDDPCSATYPLMQKLRQVLVDHALENGDREKNSSTSIFLKIGAFEEELKTLLPKEVENARIEVENGNPVIPNRIKECRSYPLYRFVREELGTDLLTGEKVRSPGEEFDKLFSAMCEGKLIDPLLECLKEWNGAPLPIC 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0360 719 NCBIfam phenylalanine ammonia-lyase 28 709 IPR005922 GO:0005737|GO:0006559|GO:0016841
Dere01g0360 719 PANTHER HISTIDINE AMMONIA-LYASE 23 719 IPR001106 -
Dere01g0360 719 Gene3D Fumarase/aspartase (Central domain) 266 714 - -
Dere01g0360 719 CDD PAL-HAL 64 529 IPR001106 -
Dere01g0360 719 Gene3D - 22 265 IPR024083 -
Dere01g0360 719 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 201 217 IPR022313 GO:0016841
Dere01g0360 719 SUPERFAMILY L-aspartase-like 28 719 IPR008948 GO:0003824
Dere01g0360 719 Gene3D - 532 653 IPR023144 -
Dere01g0360 719 FunFam Phenylalanine ammonia-lyase 532 653 - -
Dere01g0360 719 FunFam Phenylalanine ammonia-lyase 22 265 - -
Dere01g0360 719 FunFam Phenylalanine ammonia-lyase 266 559 - -
Dere01g0360 719 Pfam Aromatic amino acid lyase 66 541 IPR001106 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0360 Dere-ChrDere01 8371768 8375325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0360 28 719 Monolignol Biosynthesis Gene Families AT3G53260 84.538 0.0 1238