Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0356 ATGCATAGTGTCTTGCGGTTACAGAGTAGAATAGCTTACTGGTTCGTCATTTATGTTGTTGTGAATATACATTCTTTTCTTTTTTTACATGTAATGGGTAATATTGAAATTCCCAATTGGCTAAAAGGGTTGCCATTGGCACCGGAATTTCGCCCAACTGATACCGAGTTCGCCGACCCAGTTGCTTATATTTCAAAGATTGAGAAGGAAGCTGGCGCCTTTGGAATATGTAAGATTATTCCACCATTACCGAAACCTTCAAAAAGATATGTCTTCTCTAATTTAAATAAGTCCCTTTCAAAGTGCCCGGAATTGGCCTCAGATATTAATTCAGCTGGAGTTAGTAATTCTTTGAAAATGGGTTCTGGGGACAGTGGTAATGATGGGGAGGTGCGGGCCGTGTTTACCACAAGGCATCAAGAACTGGGGCAGAGTGTTAAAAGAACCAAAGGAACAGTTCAAAGTCCACTCGTAGGTGTTCATAAGCAAGTATGGCAGAGTGGGGAAATTTATACAATTGAACAGTTCGAGTCTAAATCAAAGGGTTTTGCAAGAAGCATACTAGGTGCAGTTAAGGAGGTTTCTCCTCTGGCTATAGAGGCTATGTTTTGGAAGGCAGCTTCGGAGAAGCCTATATATGTGGAGTATGCCAATGATGTGCCTGGGTCTGCTTTTGGAGAATCCAAGGGTCAATTTCATTATATTCATAGAAGGCGTAGGAGAAAGGCTTCTTATAAGAGGAGTCTAGAGTGCACTGATTGCCACGAAACTGAAATGAATAGCATAAGAGATGCCCAGACTGGTCAAAGTGAGAATGACCAAAATCATGCAGACACATGTTTACAGACATCAAACTCAACAACATCTCTGTCAACATTTTCATCAGATGAAGCTCCATATTCTATTAGGCAGAAGAGTTCAGATTCTAGCAATGAGATGGAAGGTACTGCTGGTTGGAAGCTTTCAAACAGTCCTTGGAACTTACAAGTGATTGCACGTTCACCTGGCTCGCTAACACGTTTTATGCCAGATGATATTCCTGGTGTTACTTCCCCCATGGTATACATTGGTATGTTGTTCAGTTGGTTTGCTTGGCATGTGGAGGATCATGAACTTCACAGCATGAATTTTCTTCACACTGGCTCGCCCAAGACTTGGTATGCTGTTCCTGGAGATTATGCCTTTGCTTTTGAGGAAGTCATCCGCTCTGAGGCTTATGGTGGTAATATTGATCACTTAGCTGCTTTGACACTGTTGGGGGAGAAGACAACCCTTCTATCACCAGACACAGTTGTTGCATCCGGGATCCCTTGTTGCAGGTTGTTGCAGAACCCTGGGGAGTTTGTTGTGACTTTTCCAAGGGCTTATCATGTAGGATTCAGCCATGGTTTTAACTGTGGGGAAGCTGCTAACTTTGGAACTCCACAATGGCTTACAGTAGCCAAGGAAGCTGCAGTGCGTAGAGCTGCAATGAATTATCTTCCCATGCTCTCCCATCAGCAACTGCTTTACTTATTGACTATGTCTTTTGTTTCAAGGGTGCCAAGAACATTATTACCAGGTGTGCGGAGTTCCCGTCTGAGAGATCGTCAAAAGGAAGATAGGGAATTGTTAGTGAAAAGGTCCTTTATAGAAGATATGCTGCTAGAAAACAGTCTACTCTCTATTCTTCTTGGAAAGCAATCAACTTGTCACATTGTTTTGTGGAATGCTGATTTACTCCCTGATTCAAGCAAGGATTCTCAGTTGCCTGATTTAACTTCTACTACTGGAACAGACAATATCTCAAATTTGAGTTCTGCAGATAAGAGCAGTCACAGTTGTCTGTTTGATGAGATGAGCTTGTATATGGAGAATCTGACTGATTTTTATCTTAGTGGCGGTGACAGTCTTCCATGTCACTTCCAAACTGACTCAGGGGCACTGGCTTGTGTGGGTTGTGGAATTCTTGGTTTTCCATTTATGACTGTCGTACAACCATCTGAGAGATCAGCAATGGAACTTTTGCCTGTCACAGGGAATCTCCTTTCTGCTTCTGATCTTTCTTCAGCAAAGGAACCATCAAAACAATCATTAATGAACTTTGACAAGGGTTGGAATACCTCTAGCAAATTTTTTAGGCCTCGTATTTTCTGCCTGGAGCATGCTGTTCAGATTGTGGAGATGTTGCAGGGTAAAGGTGGAGCAAATGTGCTTGTAATTTGCCATTCAGACTATGAGAAAATAAAGGCACATGCCAGGGCAGTAGCAGAGGAGATAGGTAGTGCTTTTGATTATAACGATGTTCCATTAGATATTGCATCCCTTGAAGATTTGACCTTGATAGATCTTGCCATTGATGGTGAAGAACACAATGAATGTGAAGAAGACTGGACTTCTGAATTAGGTATTAACTTGCGGTATTGCGTCAATGCAAGAAAAAACTCTCCATCTAAACAAGTTCCTTACAATCTGGCATTGGGAACACTGTTCTCTGACAAACTTCCTGATTCAGAGTTCTTATCTATAAATTGGCAGTCAAGGAGATCTCGCTCCAGAAGGTTAAAGTATTTAGCTCAAGAAAAAGCTTGTGACAAGATTCAGAGAGAGAAGGATGATAAGTCAGAAGGAAAAAAGGTTGGCTCCGATGCTAAAAAGATGCTTCAGTATTCAAGAAGAAAGTTCAGGTCAAAGCAAGGTTGTTTCTCTGGAGCAAACATGGTTCACAAACCCCATAAAGAGTCCATGAATGTGTCAGCTGTCTTCGGTGGAGATTGTTGTAATCAGGTTTCTGAAAATGAGCTTGACCCCAAGAATTCTAGGAGTGGTTGTGCAATTTCATGTGTCTCTGCTTCTGCTAGGTTGTCTAATATGCAACCTCAAAACCAAGTTACTGAAATGGCCACTGTTATGAGTTTGAAAGCTGCTTCACCACTATCAAATATCTCTTCAGAACCTACATTAGTGGATGAAAATGCTGGGTCAGAGGTCCAGAATCACACTACAAAGGAATTAACGGTAGATGGCAAAAGTAGTTGTTCAACACCTGATCATTTTATGATGCCTCACAAGATGGTTGCTTCAGAAATTTGTAGCAAGGACAAAGATATTTCTCATGACAAGAAATATTCTAGTTCAATCACTGTTGCTACTGGCCTAAACACTGAAATGCTTAACGAGAATCATGGTACAGAAGCAATTAACACCAATAGTAATGGCAATAGCTTGGTTTTGTATGAAGTACGTCAAGAACTTCAGTCTACCCACAAAAGTGTCAAGGTGGATGCTACTTCATCTGCCATTTCTTCTGTAACTCCGCAGACAATTGCCTCCCTTGAAGAAATTTCTGAAAGTGCAAGAAAGAATCATAGCACAGAAAGAATTAGCAATGGCACCTCCCTAAAAGAGACAATGCAGGAAACTTTTAGTTTGAATGGAAGCAGCAAGGAACCTACTCTAAATTATGATAAACTAATAAATGGGCAGACTTCAAACATTGAAGCTCTTGAAGTTCCAGAAGAGCTTTGTGCCCCTGTAGGCTTGCATAATGCTGTAGCCTTAGATGTTGAAGTGCAGCAGGAAACTCAGAGTCCACAAGCTAACAAGCGGGAAATAAATCAGTCTAATCATCTTTCAGTGAAACAATGTTGTGAAGGGATTAATAATGCAGTGATTTTAGATTCTGAAAAGCAGCGTCTGATCCAGAATAAGAATAGAATTGATGTGGAAACAGCCCCTAGTTATGTTACAAAAGGGAAACATAAAAGTATAACTGTCTCAAGTTCCAAGGTTTCAGTGGAAACCTGTCCTAAAAGAAACTCGAGTCCTCAATTTATTTCAGAGGTAAAAAAGGAACTGGAAATCCATACAAAAAGTATGAACGATAAAGAAATCTGCTCCAGTAGTGGTTCTGAGCCATCATTAAAGGACACTTATGTGTCAATCCAGGAGTGTTCTGCAATTGAGGAAGAGACATTTGCTAGAGATAACTTAAGTGGAACCGAAGTTCACTTTTCACAAGACAATAGGGAGCTGGAAAGCTCTGAAACTTTACCAGGCCTCAGGTCAAATGGCCGAAAGAAAAGAAACAGGGAATTGGAACAGATAGAAGAGAACAATACAAGTTGCTATGACTTTGTTAGAAGTCCATGCGAAGGGTTGAGGCCAAGAGCTAGTAAAATAGCCCCTGGTAGAAGCATGACCGAAACCAGCAATATAGTAGAGGAAAATCTGGAGGTTAAAAGGTCTAGGAGGAAACCTTCAGATGATGTTGTGGTTCCTAGCCAGAATAAAAGGAATACTGTTAAGAGGTCTCACAAGTGTGACCTTGATGGTTGCCATATGATTTTTGTGACTAAGGCAGAGTTAATGTTGCACAAGCGCAACCGCTGCCCTCTTGACGGGTGTGGAAAGAAGTTCAGATCCCACAAATATGCGCTGCTTCACCAGCGTGTCCATGATGACGAGCGGCCCCTTAAGTGCCCATGGGAAGGTTGCTCCATGTCATTCAAGTGGGCATGGGCAAGGACTGAGCATATACGGGTCCATACTGGGGAAAAGCCATACCAGTGTAAGATTGAGGGATGTGGCCTTTCTTTCAGATTTGTATCTGATTTTAGTAGGCACAGGCGGAAAACTGGGCACTATGTGAAGTCACTTGACTGA 4644 0.4165 MHSVLRLQSRIAYWFVIYVVVNIHSFLFLHVMGNIEIPNWLKGLPLAPEFRPTDTEFADPVAYISKIEKEAGAFGICKIIPPLPKPSKRYVFSNLNKSLSKCPELASDINSAGVSNSLKMGSGDSGNDGEVRAVFTTRHQELGQSVKRTKGTVQSPLVGVHKQVWQSGEIYTIEQFESKSKGFARSILGAVKEVSPLAIEAMFWKAASEKPIYVEYANDVPGSAFGESKGQFHYIHRRRRRKASYKRSLECTDCHETEMNSIRDAQTGQSENDQNHADTCLQTSNSTTSLSTFSSDEAPYSIRQKSSDSSNEMEGTAGWKLSNSPWNLQVIARSPGSLTRFMPDDIPGVTSPMVYIGMLFSWFAWHVEDHELHSMNFLHTGSPKTWYAVPGDYAFAFEEVIRSEAYGGNIDHLAALTLLGEKTTLLSPDTVVASGIPCCRLLQNPGEFVVTFPRAYHVGFSHGFNCGEAANFGTPQWLTVAKEAAVRRAAMNYLPMLSHQQLLYLLTMSFVSRVPRTLLPGVRSSRLRDRQKEDRELLVKRSFIEDMLLENSLLSILLGKQSTCHIVLWNADLLPDSSKDSQLPDLTSTTGTDNISNLSSADKSSHSCLFDEMSLYMENLTDFYLSGGDSLPCHFQTDSGALACVGCGILGFPFMTVVQPSERSAMELLPVTGNLLSASDLSSAKEPSKQSLMNFDKGWNTSSKFFRPRIFCLEHAVQIVEMLQGKGGANVLVICHSDYEKIKAHARAVAEEIGSAFDYNDVPLDIASLEDLTLIDLAIDGEEHNECEEDWTSELGINLRYCVNARKNSPSKQVPYNLALGTLFSDKLPDSEFLSINWQSRRSRSRRLKYLAQEKACDKIQREKDDKSEGKKVGSDAKKMLQYSRRKFRSKQGCFSGANMVHKPHKESMNVSAVFGGDCCNQVSENELDPKNSRSGCAISCVSASARLSNMQPQNQVTEMATVMSLKAASPLSNISSEPTLVDENAGSEVQNHTTKELTVDGKSSCSTPDHFMMPHKMVASEICSKDKDISHDKKYSSSITVATGLNTEMLNENHGTEAINTNSNGNSLVLYEVRQELQSTHKSVKVDATSSAISSVTPQTIASLEEISESARKNHSTERISNGTSLKETMQETFSLNGSSKEPTLNYDKLINGQTSNIEALEVPEELCAPVGLHNAVALDVEVQQETQSPQANKREINQSNHLSVKQCCEGINNAVILDSEKQRLIQNKNRIDVETAPSYVTKGKHKSITVSSSKVSVETCPKRNSSPQFISEVKKELEIHTKSMNDKEICSSSGSEPSLKDTYVSIQECSAIEEETFARDNLSGTEVHFSQDNRELESSETLPGLRSNGRKKRNRELEQIEENNTSCYDFVRSPCEGLRPRASKIAPGRSMTETSNIVEENLEVKRSRRKPSDDVVVPSQNKRNTVKRSHKCDLDGCHMIFVTKAELMLHKRNRCPLDGCGKKFRSHKYALLHQRVHDDERPLKCPWEGCSMSFKWAWARTEHIRVHTGEKPYQCKIEGCGLSFRFVSDFSRHRRKTGHYVKSLD 1547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0356 1547 ProSiteProfiles JmjN domain profile. 47 88 IPR003349 -
Dere01g0356 1547 FunFam Probable lysine-specific demethylase ELF6 1482 1511 - -
Dere01g0356 1547 MobiDBLite consensus disorder prediction 1324 1360 - -
Dere01g0356 1547 SUPERFAMILY beta-beta-alpha zinc fingers 1455 1492 IPR036236 -
Dere01g0356 1547 Gene3D Classic Zinc Finger 1453 1539 - -
Dere01g0356 1547 MobiDBLite consensus disorder prediction 265 318 - -
Dere01g0356 1547 SUPERFAMILY beta-beta-alpha zinc fingers 1495 1538 IPR036236 -
Dere01g0356 1547 ProSitePatterns Zinc finger C2H2 type domain signature. 1487 1509 IPR013087 -
Dere01g0356 1547 ProSitePatterns Zinc finger C2H2 type domain signature. 1517 1541 IPR013087 -
Dere01g0356 1547 ProSiteProfiles Zinc finger C2H2 type domain profile. 1485 1514 IPR013087 -
Dere01g0356 1547 ProSiteProfiles JmjC domain profile. 323 489 IPR003347 -
Dere01g0356 1547 Pfam JmjC domain, hydroxylase 353 472 IPR003347 -
Dere01g0356 1547 MobiDBLite consensus disorder prediction 583 602 - -
Dere01g0356 1547 SUPERFAMILY Clavaminate synthase-like 305 486 - -
Dere01g0356 1547 PANTHER LYSINE-SPECIFIC DEMETHYLASE 39 1481 - -
Dere01g0356 1547 SMART c2h2final6 1515 1541 IPR013087 -
Dere01g0356 1547 SMART c2h2final6 1485 1509 IPR013087 -
Dere01g0356 1547 SMART c2h2final6 1455 1479 IPR013087 -
Dere01g0356 1547 SMART c2h2final6 1432 1454 IPR013087 -
Dere01g0356 1547 ProSitePatterns Zinc finger C2H2 type domain signature. 1457 1479 IPR013087 -
Dere01g0356 1547 ProSiteProfiles Zinc finger C2H2 type domain profile. 1455 1484 IPR013087 -
Dere01g0356 1547 SMART cupin_9 320 489 IPR003347 -
Dere01g0356 1547 Gene3D Cupin 40 493 - -
Dere01g0356 1547 Pfam jmjN domain 48 81 IPR003349 -
Dere01g0356 1547 ProSiteProfiles Zinc finger C2H2 type domain profile. 1515 1541 IPR013087 -
Dere01g0356 1547 SMART JmjN_1 46 86 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0356 Dere-ChrDere01 8326613 8335925 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0356 32 887 C2H2 Transcription Factor Family AT5G04240 57.740 0.0 1006
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere01g0356 JmjC 5.3e-36 CL0029
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g0356 01 8326613 8335925 Dere01g0356 01 8326613 8335925 ECH