Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0349 ATGTCTGAGTCTAGGACGAGCTCGAAGAAATTGTTGGCGATACTCATTTGGTTAGGCATTGTGGTTTTGAGCTTGTTCAGTGGAACAAAGTGTCAAGACGTGGATGACTACGACCAGATCGGCAATCCAGCTGTTCTTCCCCTTGTTACGCAGCTTGTGTACACTCGAATTTCCAATCTGACTTCGGTTCTCAGTCAGGAAATCGGCAGCCGCTCCAGTTTCTGTGTCAAAGATCCGGAAGCTGACTGGAACCAAGCATTTAATTTTTCATCTGATTTGGACTTCTTGACTTCTTGCATAAGGAAAACTAAAGGAGATATCACAAAACGCTTGTGTACAGCAGCAGAGATGAGGTTTTACTTTAATAGTTTATTTGAGAGATCAACAAGTGCCAATTACCTAAAGCCTAACAAGAACTGCAATTTAGCCTCATGGGTCTCTGGTTGCGAGCCAGGATGGGCCTGTAGTGTTGGCCCAAAACAGCAGGTTGACCTTCAAGATTCAAAGGAGATACCTGCAAGAACCACTAACTGTCAAGCATGTTGTGAGGGCTTCTTCTGTCCTCATGGCCTCACGTGCATGATACATATCTTTACCAATTGCCTCCGACTAAGCCGAACCATACATGTGGTGGAGCCAATATTTGGGCTGACTTTAGTAGCAGTATTGAGATATTTTGTTCAGCTGGATCATATTGTCCAACAACCACCAAAAGAGTCCCTTGCAGTAGTGGGATGCTTCAAGTTAAGTTCGTGTAATTCAAACACAGCAACCCAAAATATGCATGCATATGGAATTATGCTCATTGCTGCTTTGAGTACTCTACTACTCATTATTTACAACTTTTCTGACCAAGTTCTCACTACTAGGGAAAGGAGAGTGGCTGAATCCAGAGAAGCAGCAGCTAGAAGCGCAAGGAAGACTGCAAATGCACGCCAAAGATGGAAATCTGCAAAAGATGCTGCTAAGAAGCGTGCAAGTGGGCTGCAAGCTCAACTATCGCGCACTTTTTCTCGCAATAAGAAGGATATATCATATTCAGGAAAACTGCAAATTTTGGATCAGAAAACTTCTGCATCAGACGTTGAATTGTTGCCAACACATTCTGCTACTTCAAGCACGGCTGTACCTTCATTTGCACTGCCAAAGGAAAAGGGAAAAGAACCCAGTGACCTGATGCTGATGATGCATGAAATAGAAAATGACCCAGACATTGATGACAACTTCAACGTAGAAAGTAAAGAAAGAAGTGTTACGGGGAACGTGCCCAAGGGAAAACGACTGCATACACATACGCAGATTTTTAAGTATGCATATGCCCAACTTGAAAAAGAGAAGGCTCAGCAACAAGAAAACAAGAACCTTACTTTCTCGGGAGTAATTAGAATGGCTACCAACACCGAACAGAGGAAAAGGCCATTAATTGAGATTTCTTTCAAAGATCTGACTCTCACTTTGAAAACACAAAACAAGCATATATTGAGATGTGTTACTGGTAAAATTAAACCTGGTCGCATTACTGCTGTCATGGGTCCATCAGGTGCAGGCAAGACTACATTTCTTTCAGCTCTGGTCGGGAAAGCATTTGGATGCACAGCCACTGGTTCAATTCTTATAAATGGAAAGAATGAGTCAATCCACTCCTACAAGAAAATTATTGGCTTCGTGCCACAAGATGATATAGTTCACGGAAACTTAACAGTGGAAGAGAACCTCTGGTTCAGTGCACAGTGCAGGCTATCTGCTGACTTGTCGAAACCGGATAAAGTTCTGGTTGTTGAAAGGGTTATTGAATTCTTGGGGCTTCAGTCAGTGCGAAATTCCTTGGTTGGGACTGTGGAAAAGCGAGGAATCTCCGGTGGTCAAAGGAAGCGTGTAAATGTTGGGTTGGAGATGGTCATGGAACCTTCACTTCTGATTTTGGATGAACCCACGTCTGGTTTGGACAGTGCATCGTCTCAACTCCTTCTTAGAGCACTTAGACGTGAAGCTCTTGAGGGGGTAAACATTTGCATGGTCGTGCACCAACCCAGCTATGCCTTGTTCAAGATGTTTGATGACTTAATACTTCTGGCAAAAGGTGGTCTTACTGTCTATCATGGATCAGTAAAGAAAGTTGAAGACTACTTCGGAGGTCTTGGGATCAATATCCCAGAACGGATCAATCCTCCGGACTACTTCATTGACATTTTGGAGGGTATAACAGTACCTGGCGGAAGCTCAGGCGTGAGCTATCGAGAACTTCCAATTAGGTGGATGCTTTATAATAACTACCCAGTACCTTTTGACATGCAGCAGAGTGTATCTGAATTCGATGTATCCTCCCAAAGTGTAAACCCAGCTAGTGAAAAGGATCCTAATGGCTCTGGATATATGCAATCCTTTGCTGGAGAGTTATGGCAAGATGTTAGACACAACGTGGAACTGCAGGGTGAGAAGATTAGACTCAATTTTTCGAAGTCCAAGGATTTATCTAACCGGAAAACTCCTGGTGTGTTTAAGCAATATAAGTACTTCTGTATAAGGGTCGGTAAGCAGAGACTAAGGGAAGCTAGGATTCAAGCCATAGATTACCTAATTTTATTACTTGCTGGAGCTTGCTTAGGATCGCTTACAAAAACGAGTGAACAAACGTTTGGTGCAGCTGGGTACACATACACTGTGATTGCTGTCTCTCTTCTATGCAAAATAGCAGCCTTGAGATCATTTTCTCTTGATAAACTACACTACTGGAGGGAGAGTGATTCCGGCATGAGCAGCTTGGCTTATTTTCTCTCCAAAGACACAATTGATCATTTTAATACAGTGATCAAGCCTCTGGTGTACCTGTCCATGTTTTATTTTCTCACCAATCCAAGATCTAGTTTTGCAGATAATTACATTGTGCTTCTCTGCCTTGTATATTGCGTGACTGGCATAGCTTATGCATTGGCCATGTACTTTGAACCTGGTGCCGCCCAGCTATGGTCAGTACTTCTTCCAGTTGTTTTGACACTCATTGCAACGCAACAAAAAGATAGTGAATTTTTGAAGGGTGTAGCTAATTTATGCTATCCTAAGTGGGCTTTGGAAGCATTTGTGACTGCAAATGCTGAAAGGTATCATGGAGTGTGGCTCATAACTCGTTGTGGATCACTAATAAAGAGTGGATATAATCTTCATGATTGGAATTTGTGTGTATTAATCCTCATTTCTATAGGCGTAATTAGTCGAGCCATAGCATTTTTTTGCATGGTTACTTTCCAAAAGAAGTCAGTTCCCATCACCACCACCGACAAAACACCTTCCACCACCAGAAAAATGGATCTCTGGCTCATTTTAGAAAGAGTTGTGGCTATGTCCCTCGAGGGAAGAGAGAAGATAGGTCGTGGTTTGATCTCCAATCTTCACTATCGTTGGAGGTTTATAAATGATGGTGATGACAATCACCATGTCTACATTTGCATATTTGTAGCTTCAGTTGAGTAA 3468 0.425 MSESRTSSKKLLAILIWLGIVVLSLFSGTKCQDVDDYDQIGNPAVLPLVTQLVYTRISNLTSVLSQEIGSRSSFCVKDPEADWNQAFNFSSDLDFLTSCIRKTKGDITKRLCTAAEMRFYFNSLFERSTSANYLKPNKNCNLASWVSGCEPGWACSVGPKQQVDLQDSKEIPARTTNCQACCEGFFCPHGLTCMIHIFTNCLRLSRTIHVVEPIFGLTLVAVLRYFVQLDHIVQQPPKESLAVVGCFKLSSCNSNTATQNMHAYGIMLIAALSTLLLIIYNFSDQVLTTRERRVAESREAAARSARKTANARQRWKSAKDAAKKRASGLQAQLSRTFSRNKKDISYSGKLQILDQKTSASDVELLPTHSATSSTAVPSFALPKEKGKEPSDLMLMMHEIENDPDIDDNFNVESKERSVTGNVPKGKRLHTHTQIFKYAYAQLEKEKAQQQENKNLTFSGVIRMATNTEQRKRPLIEISFKDLTLTLKTQNKHILRCVTGKIKPGRITAVMGPSGAGKTTFLSALVGKAFGCTATGSILINGKNESIHSYKKIIGFVPQDDIVHGNLTVEENLWFSAQCRLSADLSKPDKVLVVERVIEFLGLQSVRNSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSASSQLLLRALRREALEGVNICMVVHQPSYALFKMFDDLILLAKGGLTVYHGSVKKVEDYFGGLGINIPERINPPDYFIDILEGITVPGGSSGVSYRELPIRWMLYNNYPVPFDMQQSVSEFDVSSQSVNPASEKDPNGSGYMQSFAGELWQDVRHNVELQGEKIRLNFSKSKDLSNRKTPGVFKQYKYFCIRVGKQRLREARIQAIDYLILLLAGACLGSLTKTSEQTFGAAGYTYTVIAVSLLCKIAALRSFSLDKLHYWRESDSGMSSLAYFLSKDTIDHFNTVIKPLVYLSMFYFLTNPRSSFADNYIVLLCLVYCVTGIAYALAMYFEPGAAQLWSVLLPVVLTLIATQQKDSEFLKGVANLCYPKWALEAFVTANAERYHGVWLITRCGSLIKSGYNLHDWNLCVLILISIGVISRAIAFFCMVTFQKKSVPITTTDKTPSTTRKMDLWLILERVVAMSLEGREKIGRGLISNLHYRWRFINDGDDNHHVYICIFVASVE 1155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0349 1155 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 477 719 IPR003439 GO:0005524
Dere01g0349 1155 MobiDBLite consensus disorder prediction 298 321 - -
Dere01g0349 1155 Pfam ABC transporter 496 646 IPR003439 GO:0005524
Dere01g0349 1155 CDD ABCG_EPDR 475 701 - -
Dere01g0349 1155 Gene3D - 475 710 IPR027417 -
Dere01g0349 1155 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 477 711 IPR027417 -
Dere01g0349 1155 FunFam ABC transporter G family member 24 471 713 - -
Dere01g0349 1155 SMART AAA_5 503 695 IPR003593 GO:0016887
Dere01g0349 1155 Pfam ABC-2 type transporter 675 1084 IPR043926 GO:0140359
Dere01g0349 1155 ProSitePatterns ABC transporters family signature. 618 632 IPR017871 GO:0005524|GO:0016887
Dere01g0349 1155 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 443 1073 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0349 Dere-ChrDere01 8251128 8262852 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0349 465 678 Calmodulin-binding Proteins AT2G36910 26.941 1.35e-14 77.0