Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0348 ATGTTCAAAACGAGTCTTAATGCTTCTTCTTCTAACTTCTGCTGCAGAATGCATTGGTCATGGTTAGCCATTCTGGTTTTGGGGTCGTTGAGTTTGGTCCGGTGCCAAGTTAACAGTGACTTCAATCAATTCAATGATTCTTCTGCTGCTCTTTCCATTGTGACACAGCTTGTGTATGGCCAGATTTCCAATCTTACTGGAGATCTCAGCCAGGAAATTAAAAGCCGGTCCAGCTTCTGCGTCAAAGACCTGGAAGCTGAGTGGAACAAGGCATTTAACTATTCATCTGATTTGAGCTTCGTGACTTCTTGCATTCAGAAGACTCAAGCAGATATTTCACAACGATTGTGTACAGTAGCAGAACTGCAGTCTTATGTTAGAAGCATATATGAAAAAACTGGAAGTACCAATTACATGAGGCCTAACAGGAACTGCAATTTAACTTCATGGGCTTCTGGTTGTGAGCCTGGATGGGCCTGTAGTACCGACTCAGATCAGCAGGTTGACCCTAGAACTTCAGAGGATATGCCTACAAGAACTACAAACTGCCAGGCATGTTGTGCGGGCTTCTTCTGTCCGCAGGGTATCACCTGCATGATACCTTGTCCGTTGGGTTCCTATTGCCCTCTAGCAACACTCAATCAAACAACTGGTGTATGCGAACCATATTCTTACCAACTACCAACGAACCAGCCAAACCATACTTGTGGAGGAGCAAATGTTTGGGCTGATGTTGATAACAGTGAAGGAATATTTTGTCCAGCAGGATCTTATTGTCCAACACCCACCAAAAACTTCTCCTGCAGTAATGGACATTACTGCCGGATGGGATCTATATCTCAGAAACGCTGCTACAATTTGGTATCATGTAAATCAGGCACTGAAAGTCAGGACCTTCATCTATATGGGATCATATTCATAGTTGCTTTGAGTACATTGCTACTCATTATTTACAGCTGCTCTGATCAAGTTCTTTCAATTAGGGAAAGAAGGCTAGCCAAATCAAGAGATGCAGCTGCCAGAAGTGCAAGGAGCACGGCACAAGCACGTAGAAGGTGGAAAGACGCAAAAGATGCAGTTATAAAGCATACTAGCAGGCTTCAATCTCATTTGTCTTTCTCATTCTCTCACCGACGAAATGTACCACACTCGGAAGAACTTCTGATTTTAAATCAAGCAATACCTGAGACAGATGATGGTTCCTTATCGTCTCAACCTTCTAGCACTTCAAGAGCCACTTTAGATTTCAGCGATCAAATGGAAATGAGGAATGAAATTGAAGATGAAGCTGCTGTTCATGGTGTGTTTGATATGGAAACTGGACATAGGGTTGATACTGCGAATAATTACAGGGGAAAAAAACTACATACACGAAGTAAGATATTTAGGTATGCATATTCCCAACTTGAGAAGGAGAAGGATCAGCAAAAAGAATACAAGAATCTTACCTTCTCAGGAGTAATTAGTATGGCTGCCAACAGTGAACAAAGGAAAAGGCCTCTGATTGAAATTTCTTTCAAAGATCTGAGTCTTACTTTAAAATCAGAAAACAAGCATATACTGCAATATGTTACTGGGAACTTAAAACCTGGTCGCATTACTGCTGTCATGGGTCCTTCAGGGGCTGGTAAAACAACATTTCTTTCAGCGATTGCAGGAAAAACAATAGGATGCAAGATGAGTGGTTTAATTCTCATAAATGGAAAGAATGAATCAATCCATTCTTATAAGAAAATTACTGGTTTTGTGCCACAAGATGATATTGTTCATGGAAACCTGACAGTGGAAGAGAATCTCTGGTTCAATGCAAATTGCAGGCTCTCTACTAAATTGTTAAAGGCGGATAAAGTAGTGGTTGTTGAAAGAGTTATTGAATTCTTGGGACTCCAGTCTGTGCGCAATTCCCTGGTTGGAACAGTGGAAAAGAGAGGAATATCTGGAGGCCAAAGGAAGCGAGTGAATGTTGGATTGGAAATGGTCATGGAACCCTCACTGTTGATCCTGGATGAACCCACGTCAGGCTTGGATAGTGCGTCGTCTCAGTTACTTCTTAGAGCACTTCGGCGTGAAGCTCTTGAAGGGGTGAATGTCTGCATGGTAATTCACCAACCAAGTCATGCATTGTTCAAGATGTTTGATGATCTGGTACTCCTGGCAAAAGGCGGTCTTACTGTCTATCATGGACCTGTCAATAGAGTTGAAGAATACTTTGCAGGCCTTGGGATCATTATCCCTGACCGAATTAATCCTCCAGACTACTTTATTGACATCTTGGAGGGAGTGATAAAACCTAGTGGAAGCTCAGGAGTGAAGTACGAGGAGCTTGCAGTTAGATGGATGCATTACAATGGTTACTCTGTACCTCCTGACATGCAAAAGAATGACATGTCCTCCAGGCTTTTGAATCCAGTTAATGAAACAAATCAATATGATGTTGTTAATGAGGAACCATCCTTCACTGGAGAGTTATGGAAAGATGTCAAGGGTAATATAGAGGTGCATCAGGATAAGTTAAGACTGAATTTTTTGAAGTCTAAGGATTTATCAAATCGTAGAACTCCTGGTCTGTTCCAGCAATATAAGTTCTTCCTGGCAAGAGTTGCTAAGCAGCGACTTAGGGAAGCCAGAGGACAAGCCATAGACTATCTAATTTTATTACTTGCTGGAGCCTGCCTGGGATCAATTATCAAAATGAGTGATCAATCACTTGGTACAGCAGGATACATTAACACTGTGATTGCAGTTTCTCTTCTATGCAAAATTGCAGCTTTGAGATCATTTTCTCTGGATAAATTACAATACTGGAGGGAAAGTGCTTCAGGCATGAGCAGCCTGGCTTATTTTCTTTCCAAGGACACAATTGACCATTTTAATACAGTGATCAAGCCTGCAGTATACCTGTCTATGTTCTTTTTCTTCACCAACCCACGATCTACTTTTGTCAGTAATTATACTGTGCTGCTCTGCCTTGTGTACTGTGTGACTGGCATAGGCTATGCATTGGCCATTGTCTTTGAACCCGGAGCTGCCCAATTGTGGTCAGTGCTGCTTCCAGTTGTTTTGACTCTGGTCGCCACACGTGCGAAGGATAGTGCATTTATGAAGGGTATAGCTAACTTGTGCTACCCCAAATGGGCTTTGCAAGCATTTGTAATTGCCAATGCTGAGAGGTATGATAGAGTGTGGCTCATTACTCGTTGTGGAGCCCTTAACAATGAAAGCTACAATCTTAATGATTGGAGCTTGTGCATTGGAATCCTAATGCTCTTTGGTGTAGTTAGTCGCGTCATTGCATACATCTGCATGGTAACCCTTCGAAGGAAGTAA 3327 0.4205 MFKTSLNASSSNFCCRMHWSWLAILVLGSLSLVRCQVNSDFNQFNDSSAALSIVTQLVYGQISNLTGDLSQEIKSRSSFCVKDLEAEWNKAFNYSSDLSFVTSCIQKTQADISQRLCTVAELQSYVRSIYEKTGSTNYMRPNRNCNLTSWASGCEPGWACSTDSDQQVDPRTSEDMPTRTTNCQACCAGFFCPQGITCMIPCPLGSYCPLATLNQTTGVCEPYSYQLPTNQPNHTCGGANVWADVDNSEGIFCPAGSYCPTPTKNFSCSNGHYCRMGSISQKRCYNLVSCKSGTESQDLHLYGIIFIVALSTLLLIIYSCSDQVLSIRERRLAKSRDAAARSARSTAQARRRWKDAKDAVIKHTSRLQSHLSFSFSHRRNVPHSEELLILNQAIPETDDGSLSSQPSSTSRATLDFSDQMEMRNEIEDEAAVHGVFDMETGHRVDTANNYRGKKLHTRSKIFRYAYSQLEKEKDQQKEYKNLTFSGVISMAANSEQRKRPLIEISFKDLSLTLKSENKHILQYVTGNLKPGRITAVMGPSGAGKTTFLSAIAGKTIGCKMSGLILINGKNESIHSYKKITGFVPQDDIVHGNLTVEENLWFNANCRLSTKLLKADKVVVVERVIEFLGLQSVRNSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSASSQLLLRALRREALEGVNVCMVIHQPSHALFKMFDDLVLLAKGGLTVYHGPVNRVEEYFAGLGIIIPDRINPPDYFIDILEGVIKPSGSSGVKYEELAVRWMHYNGYSVPPDMQKNDMSSRLLNPVNETNQYDVVNEEPSFTGELWKDVKGNIEVHQDKLRLNFLKSKDLSNRRTPGLFQQYKFFLARVAKQRLREARGQAIDYLILLLAGACLGSIIKMSDQSLGTAGYINTVIAVSLLCKIAALRSFSLDKLQYWRESASGMSSLAYFLSKDTIDHFNTVIKPAVYLSMFFFFTNPRSTFVSNYTVLLCLVYCVTGIGYALAIVFEPGAAQLWSVLLPVVLTLVATRAKDSAFMKGIANLCYPKWALQAFVIANAERYDRVWLITRCGALNNESYNLNDWSLCIGILMLFGVVSRVIAYICMVTLRRK 1108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0348 1108 Pfam ABC-2 type transporter 702 1108 IPR043926 GO:0140359
Dere01g0348 1108 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 504 745 IPR003439 GO:0005524
Dere01g0348 1108 ProSitePatterns ABC transporters family signature. 645 659 IPR017871 GO:0005524|GO:0016887
Dere01g0348 1108 SMART AAA_5 530 722 IPR003593 GO:0016887
Dere01g0348 1108 Pfam ABC transporter 522 673 IPR003439 GO:0005524
Dere01g0348 1108 Gene3D - 490 740 IPR027417 -
Dere01g0348 1108 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 477 1099 - -
Dere01g0348 1108 CDD ABCG_EPDR 502 728 - -
Dere01g0348 1108 FunFam ABC transporter G family member 24 498 740 - -
Dere01g0348 1108 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 504 737 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0348 Dere-ChrDere01 8237346 8246722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0348 501 724 Calmodulin-binding Proteins AT2G36910 27.074 4.07e-10 62.4