Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0322 ATGGCCGGGAAGGAAGAGAACCGTATATTTGTTGGTGGCTTGTCTTGGGACGTTACGGAGCGTCAGCTCGAGCATGCCTTTGGTCGTTACGGCAAAGTTATTGAATGCCAGATCATGTTGGAAAGAGATACTGGCCGTCCACGTGGATTTGGGTTTATCACATTTGCAGATCGTCGGGGAATGGAGGATGCAATCAAGGAAATGCATGGACGGGAGCTTGGTGACCGCATTATTTCAGTCAATAAGGCACAGCCCAAAATGGGGGCAGATGATCTAGACCATGGTTACAGGAGTGGCTACTCATCTGGTGGCAGGGCAAGCTATGGGGTGGGAGATAGGGTAGGACAAGATGACTGCTTCAAGTGTGGCCGTCCTGGCCACTGGGCCCGAGATTGTCCTTTGGCAGGAGGTGGTCGTGGTGGAGGTGGTGGTTCATTTTCTTCACGTCCTAGGTTTGGAGGTGCTGGGGGCCACGGGGATCGCCTTGGTGAACGTGATCGATACATTGATGATCGTTATGATGGAGGGCGCTATGGAGATAGGGAACGCTTTGACAGCCGAGATAATAAATATGGGAGCCGGGATCGCTATGCTAGTGACAGGTACCCAGCAAGTGGAGATCGTTTTGCAAGTGATCCATATGTTGGTTCAGATCGTTACCCACAAAATGGTTATGGCAAAGATAGAGCCTATGACAGGTATGGCAGTGCAAGAGGTAATGACAGGTACGGAAGTGGAATGCCAGCACGAGATGAAGGAAGGAATTATAAGAGTAGGCCTGGACCTTACAACCGACCGAGCAGGGGTGGTCGTCCATCTTTGTTTGACCGCTACTGA 837 0.5114 MAGKEENRIFVGGLSWDVTERQLEHAFGRYGKVIECQIMLERDTGRPRGFGFITFADRRGMEDAIKEMHGRELGDRIISVNKAQPKMGADDLDHGYRSGYSSGGRASYGVGDRVGQDDCFKCGRPGHWARDCPLAGGGRGGGGGSFSSRPRFGGAGGHGDRLGERDRYIDDRYDGGRYGDRERFDSRDNKYGSRDRYASDRYPASGDRFASDPYVGSDRYPQNGYGKDRAYDRYGSARGNDRYGSGMPARDEGRNYKSRPGPYNRPSRGGRPSLFDRY 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0322 278 ProSiteProfiles Zinc finger CCHC-type profile. 119 133 IPR001878 GO:0003676|GO:0008270
Dere01g0322 278 FunFam glycine-rich RNA-binding protein RZ1C 1 115 - -
Dere01g0322 278 MobiDBLite consensus disorder prediction 158 202 - -
Dere01g0322 278 Pfam Zinc knuckle 119 133 IPR001878 GO:0003676|GO:0008270
Dere01g0322 278 Gene3D - 116 141 - -
Dere01g0322 278 SUPERFAMILY Retrovirus zinc finger-like domains 107 138 IPR036875 GO:0003676|GO:0008270
Dere01g0322 278 MobiDBLite consensus disorder prediction 139 278 - -
Dere01g0322 278 PANTHER SRA STEM-LOOP-INTERACTING RNA-BINDING PROTEIN, MITOCHONDRIAL 4 270 - -
Dere01g0322 278 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Dere01g0322 278 SUPERFAMILY RNA-binding domain, RBD 4 108 IPR035979 GO:0003676
Dere01g0322 278 SMART rrm1_1 8 81 IPR000504 GO:0003723
Dere01g0322 278 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Dere01g0322 278 SMART c2hcfinal6 118 134 IPR001878 GO:0003676|GO:0008270
Dere01g0322 278 Gene3D - 1 115 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0322 Dere-ChrDere01 7844591 7849067 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0322 9 88 C2H2 Transcription Factor Family AT2G19380 41.250 2.92e-14 70.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g0322 01 7844591 7849067 Dere01g0322 01 7844591 7849067 ECH