Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0314 ATGCTTCCTCCTATCACCTGCATTCTCTTCATGTGCCTCTTGAGTTCTTTCTCTCCTCCCATTACAGCTTCCTTCAACCTCACCTTGCCCCACCAGCACCCTTACCCTGAAGCTGTGGTTGATGAAGTTCAAAGGAGAGTCAATGTGTCTCTTTCCCGGCGGCAACTCCTTGCCGGCTCAGGAAAGGAGCAGAGCATGAACTGTCTCACCGGAAACCCCGTAGACGACTGCTGGCGGTGCGACCCGAACTGGGCAGCGAACCGGCAGAGGCTCGCGGACTGCGGCATTGGGTTCGGCCGCGACGCCCTGGGCGGGAAAGGAGGACAGATCTACATAGTAACCGACTCCTCTGACTCCGACCCGGCGAACCCAACTCCGGGGACTCTCCGGCACGCCGTGATCCAAGACGAGCCCCTTTGGATCATCTTTTCCACTAGCATGACCATCACCCTGAAGCACGAGCTCATCTTCAACAGCTTCAAGACCGTGGACGGCCGCGGCGCCTCCGTCCAAATCACCGGCCACGGCTGCCTGACGCTCCAGTACGTCTCCAACATAATCATCCACAACGTCCACATCCACCACTGCAGGCCCTCGGGGAACACAAACATACGCTCGACCCCAACGCACGTGGGGTGGCGAGGCAAGTCGGACGGCGACGGCATCTCCATCTTCTCGTCGAGGAAGATCTGGATCGACCACTGCGCGCTGTCGTACTGCACGGACGGTCTGATCGATGCGATAATGGGGTCGACGGGGATTACGATCTCGAACAACCACTTCGCTCACCATGACGAAGTGATGCTGCTGGGTCACAACGACAAGTACTCGCCGGACACGGGGATGCAGGTGACGATAGCGTTCAACCATTTCGGCGAGGGTCTGGTGCAGCGAATGCCACGATGCAGACTGGGGTATATACACGTGGTGAACAATGATTTCACGCAGTGGCAGATGTACGCTATCGGCGGGAGTGCCAACCCCACCATTAACAGCCAGGGCAATCGGTATACTGCTCCGGGCAATCCTGATGCGAAGGAGGTGACGAAGCGCGTGGACACAGACGAGAGGCAGTGGACGGACTGGAACTGGAGGACAGAGGGGGACATAATGGTAAATGGAGCATTCTTCGTGCCCTCCGGCGCCGGCTTCAGCGCCCAGTACGCCAGAGCCTCCAGCGTCGAACCCAAGTCCGCCGTCCAGATCGACCAGCTCACCATGAACGCGGGCGTCTTCGGCGATCCCAGGGATAATGGAGATATATTTCCCGGATTCAGCGGCGGTGGGACCGTCACCGGCGCCACCAACACCGGCAGCGGCGGCGACGATGGTGACTTCTTTGGAATGATATTCAAGGGTAGTAGCAGCCAAGCAGCACCACCCTCACTCTCCATTGTTTCAACTTTTTGGTCTCTTTTCATTATTCTCATTTTGTACACTTTCACCTTCCATGGTGTCCTATTATTTTCCACACTATGA 1479 0.5727 MLPPITCILFMCLLSSFSPPITASFNLTLPHQHPYPEAVVDEVQRRVNVSLSRRQLLAGSGKEQSMNCLTGNPVDDCWRCDPNWAANRQRLADCGIGFGRDALGGKGGQIYIVTDSSDSDPANPTPGTLRHAVIQDEPLWIIFSTSMTITLKHELIFNSFKTVDGRGASVQITGHGCLTLQYVSNIIIHNVHIHHCRPSGNTNIRSTPTHVGWRGKSDGDGISIFSSRKIWIDHCALSYCTDGLIDAIMGSTGITISNNHFAHHDEVMLLGHNDKYSPDTGMQVTIAFNHFGEGLVQRMPRCRLGYIHVVNNDFTQWQMYAIGGSANPTINSQGNRYTAPGNPDAKEVTKRVDTDERQWTDWNWRTEGDIMVNGAFFVPSGAGFSAQYARASSVEPKSAVQIDQLTMNAGVFGDPRDNGDIFPGFSGGGTVTGATNTGSGGDDGDFFGMIFKGSSSQAAPPSLSIVSTFWSLFIILILYTFTFHGVLLFSTL 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0314 492 FunFam Pectate lyase 71 413 - -
Dere01g0314 492 SMART amb_all 146 343 IPR002022 -
Dere01g0314 492 Pfam Pectate lyase 154 335 IPR002022 -
Dere01g0314 492 PRINTS Pollen allergen Amb family signature 94 111 IPR018082 -
Dere01g0314 492 PRINTS Pollen allergen Amb family signature 391 414 IPR018082 -
Dere01g0314 492 PRINTS Pollen allergen Amb family signature 154 170 IPR018082 -
Dere01g0314 492 PRINTS Pollen allergen Amb family signature 320 339 IPR018082 -
Dere01g0314 492 PRINTS Pollen allergen Amb family signature 362 386 IPR018082 -
Dere01g0314 492 PRINTS Pollen allergen Amb family signature 218 239 IPR018082 -
Dere01g0314 492 PRINTS Pollen allergen Amb family signature 298 317 IPR018082 -
Dere01g0314 492 PRINTS Pollen allergen Amb family signature 118 143 IPR018082 -
Dere01g0314 492 SUPERFAMILY Pectin lyase-like 72 411 IPR011050 -
Dere01g0314 492 Gene3D - 71 413 IPR012334 -
Dere01g0314 492 PANTHER PECTATE LYASE 18-RELATED 31 412 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0314 Dere-ChrDere01 7650085 7655709 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0314 22 418 Polysaccharide Lyase AT3G54920 68.395 0.0 582