Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0312 ATGTTTTCAAGATATATACATCCACACGAAGGATCAGTTGGGCAGCAGGAAGATTCAAACCAGAGTCACTTGGGAGACCCACGACTTGTACTGACTGCTGATCCCAAACCTCGTCTTCGCTGGACTGCTGACCTTCACGAACGATTTGTTGATGCTGTCACTCAGCTTGGAGGTGCTAATATTAATAGCCTAAATGTAGTCTTTCGTGATGTAGTTTTATTACGTGATGCGTTGGAAGAGGGGGATGGTATGGAGATTTGTTTTCGATTACATCATATCAGTTTAGTAGTTAGGTTTAGAGGCTTTGACAGTGCAATGAAAGAAAGGTCCTGTAGAGAAGCTACACCAAAAGCAATCATGCGGACCATGAATGTCAAGGGTTTAACCCTCTATCATTTAAAGAGTCATCTTCAGAAATATAGACTTGGTAAGCAATCAGGGAAAGAATTTGATGAGGGATGCAAAGATGGAAAATCAGCTTCATATCTACTAGAAAGCCCTGGTACTGGTAACTCTTCTCCAAAGTTGCCAGTTTCTGATGCAAAGGAGGGTCTTGAGGTCAAGGAGGCGTTAAGAGCGCAGATGGAGGTGCAAAGTAAACTGCATTTGCTAGTCGAGGCAGAGAAGCACTTGCAGATACGCCAGGATGCAGAGCGGAGATACATGGCAATGCTTGAGAGGGCTTGTAAGATGTTGGCTGATCAATTTATAGGTGCGTCATTTATAGAAGATACTGACAGCCAAAAATTTCAAGGACTAGGAAGTGAAGCATCAAGAAGTCCGTTGATTGATCCCCTTGGCTTTGGTTCCTTACCATCTGAAGTGGCTGCTTTACATGTCCCAGAAGAAGTATCACCTAGTTTCCAGAATCAGAGAGCTGACTGTTCCTCTGAAAGTTGCCTAACATCACATGAGAGTCATGGAGGGTTGGCTCTAGAAGGATCTGTAGGTGGGGCAAAAAGGAAGGTGCAGAGCTTGGACTCTGTGGTAGCACCTTTAATCTGGAGTGAAGCCAACATGAGAACTCAAGGCATCCATTTAGCTCAAGTTAATCGTCATGGCCTCATTGGATAA 1074 0.4404 MFSRYIHPHEGSVGQQEDSNQSHLGDPRLVLTADPKPRLRWTADLHERFVDAVTQLGGANINSLNVVFRDVVLLRDALEEGDGMEICFRLHHISLVVRFRGFDSAMKERSCREATPKAIMRTMNVKGLTLYHLKSHLQKYRLGKQSGKEFDEGCKDGKSASYLLESPGTGNSSPKLPVSDAKEGLEVKEALRAQMEVQSKLHLLVEAEKHLQIRQDAERRYMAMLERACKMLADQFIGASFIEDTDSQKFQGLGSEASRSPLIDPLGFGSLPSEVAALHVPEEVSPSFQNQRADCSSESCLTSHESHGGLALEGSVGGAKRKVQSLDSVVAPLIWSEANMRTQGIHLAQVNRHGLIG 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0312 357 Gene3D - 35 145 - -
Dere01g0312 357 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 8 308 IPR044848 GO:0003700
Dere01g0312 357 MobiDBLite consensus disorder prediction 1 29 - -
Dere01g0312 357 SUPERFAMILY Homeodomain-like 102 144 IPR009057 -
Dere01g0312 357 Pfam MYB-CC type transfactor, LHEQLE motif 186 231 IPR025756 -
Dere01g0312 357 NCBIfam myb-like DNA-binding domain, SHAQKYF class 108 143 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0312 Dere-ChrDere01 7622477 7626980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0312 25 303 G2-like Transcription Factor Family AT3G24120 39.863 4.53e-48 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Dere01g0312 Myb_CC_LHEQLE 2.5e-14 No_clan