Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0311 ATGGCTTCTAGTAGTAACCCTCATGGCGCTGCAACTTCGGCCTACAGAGGTGTCCGCAAGAGGAAATGGGGCAAATGGGTATCCGAAATCCGCGAACCCGGTACCAAGACCCGGATTTGGTTAGGCAGCTTCGCAACGGAGGAGATGGCTGCGGCCGCCTACGACGTCGCCGCCTTATACTTCCGGGGAAGCGGGGCGAAGCTCAACTTCCCTGGGCTGGCCGGCGAGCTTCCCCGCCCGGCAAGCAACAATGCTGACGACATACGGGCGGCGGCGCAAGAGGGAGCATTGGTGGTGCTGAGGAACAATGCGGGCGGGGGTGGCGGCGGGTCCATGGCTGTGCCGACCACCGTGGGGTTATCGCCGAGCGAGATTCAGGCCATCAATGAGTCGCCGTTGTGGAATCAAATGTCGGAGACGCTGGTGTTGGATCAGCACGTGACGTTTGGCGATGAGTTTGAGGAGAATGAGTGGGAGGATACGCAGAATGATTCGATTTGGGATTTTTAA 510 0.5902 MASSSNPHGAATSAYRGVRKRKWGKWVSEIREPGTKTRIWLGSFATEEMAAAAYDVAALYFRGSGAKLNFPGLAGELPRPASNNADDIRAAAQEGALVVLRNNAGGGGGGSMAVPTTVGLSPSEIQAINESPLWNQMSETLVLDQHVTFGDEFEENEWEDTQNDSIWDF 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0311 169 Pfam AP2 domain 14 63 IPR001471 GO:0003700|GO:0006355
Dere01g0311 169 SMART rav1_2 14 77 IPR001471 GO:0003700|GO:0006355
Dere01g0311 169 Gene3D AP2/ERF domain 14 72 IPR036955 GO:0003700|GO:0006355
Dere01g0311 169 PRINTS Ethylene responsive element binding protein signature 15 26 IPR001471 GO:0003700|GO:0006355
Dere01g0311 169 PRINTS Ethylene responsive element binding protein signature 37 53 IPR001471 GO:0003700|GO:0006355
Dere01g0311 169 ProSiteProfiles AP2/ERF domain profile. 14 71 IPR001471 GO:0003700|GO:0006355
Dere01g0311 169 CDD AP2 13 71 IPR001471 GO:0003700|GO:0006355
Dere01g0311 169 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 9 120 - -
Dere01g0311 169 FunFam Ethylene-responsive transcription factor 2 13 72 - -
Dere01g0311 169 SUPERFAMILY DNA-binding domain 13 71 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0311 Dere-ChrDere01 7614377 7614886 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0311 13 168 AP2-EREBP Transcription Factor Family AT1G71450 55.215 2.10e-54 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere01g0311 AP2 1e-13 CL0081