Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0309 ATGGAAGCACCAGCAGAAGAAGTCTCCATGGGGGCTAAGGACCAAACCCACTTCGTCAAAGGCAAGAGAACCAAAAGGGTAAGGCCACAATCTCCTATGCCCTTCTCCACCATCGCCAAAAATGGCGACAAAGACGATGGTGCAGATAACAAGAACTCTTCAGGCACAACTTCTTCTGCAGAATTTGAAGGAAATCATAATAACAACAACATCAGCAGCAGCAGCAGCACAGAGGAAGAGGCGGACATGGCCAATTGCTTGATCCTTCTAGCTCAAGGCCAATCTCGGGATTCTCCGAAACTCGCCGGGGAAGACGGTACCATGATGTTGATGAAGTATAGTGATAATTGCAATAACAACAACAACAACAACAACATTAACAGCAGCAGTAGGAAATTCATGGAAGCAGCGGCCATGGGAGCTAACAAAGCAGGTTTTTACGTCTATGAATGCAAGACTTGCAATAGAACCTTCCCTTCTTTCCAAGCACTTGGAGGCCACAGAGCAAGCCACAAGAAGCCTAAGGCCTTAGCTTCAATGGCCGCCATTGTAGACCAGGAGAAGAAGAAGGAAGAAGAGTCTATTTTCTACAAGAACAATAACAATCATCAACATCATAATAGTAACACACTTTCTATTCAGTTTTTGAACAGTGGTAGTAATGGTGGTAATAAGAATAAGGTTCACGAGTGTTCTATCTGTGGGGCTGAGTTTGCTTCGGGACAGGCTTTGGGTGGGCATATGAGAAGGCACAGGACACCCATTGGGACGACGACCCCTACGTCGTCGTTGGCGTTGAACAACAATCGAGTGGGTTTGGAAGCAGATCAATATCAAGATCAGGATCATCATCAATCCAGAAAGAAAAGGAACGTCTTGTCTTTGGATTTAGATCTCAATCTTCCAGCCCCAGAAGATGATCACACCGATTCATCATCTTCCAAGTTTGCCTTTGAATCCAAGCAGCAGCAGCAACCACAACAACAACAGCAACAACAGCAACAAGCAAGTCTGGTTTTTGCTTCTGCACCTGCTTTGGTGGATTGTCATTACTGA 1056 0.4536 MEAPAEEVSMGAKDQTHFVKGKRTKRVRPQSPMPFSTIAKNGDKDDGADNKNSSGTTSSAEFEGNHNNNNISSSSSTEEEADMANCLILLAQGQSRDSPKLAGEDGTMMLMKYSDNCNNNNNNNNINSSSRKFMEAAAMGANKAGFYVYECKTCNRTFPSFQALGGHRASHKKPKALASMAAIVDQEKKKEEESIFYKNNNNHQHHNSNTLSIQFLNSGSNGGNKNKVHECSICGAEFASGQALGGHMRRHRTPIGTTTPTSSLALNNNRVGLEADQYQDQDHHQSRKKRNVLSLDLDLNLPAPEDDHTDSSSSKFAFESKQQQQPQQQQQQQQQASLVFASAPALVDCHY 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0309 351 ProSitePatterns Zinc finger C2H2 type domain signature. 151 171 IPR013087 -
Dere01g0309 351 MobiDBLite consensus disorder prediction 315 336 - -
Dere01g0309 351 ProSiteProfiles Zinc finger C2H2 type domain profile. 149 176 IPR013087 -
Dere01g0309 351 ProSitePatterns Zinc finger C2H2 type domain signature. 231 251 IPR013087 -
Dere01g0309 351 Gene3D Classic Zinc Finger 147 251 - -
Dere01g0309 351 PANTHER ZINC FINGER PROTEIN ZAT5 69 327 - -
Dere01g0309 351 SUPERFAMILY beta-beta-alpha zinc fingers 148 251 IPR036236 -
Dere01g0309 351 SMART c2h2final6 149 171 IPR013087 -
Dere01g0309 351 SMART c2h2final6 229 251 IPR013087 -
Dere01g0309 351 MobiDBLite consensus disorder prediction 300 336 - -
Dere01g0309 351 MobiDBLite consensus disorder prediction 51 78 - -
Dere01g0309 351 MobiDBLite consensus disorder prediction 1 78 - -
Dere01g0309 351 Pfam C2H2-type zinc finger 148 174 - -
Dere01g0309 351 Pfam C2H2-type zinc finger 228 253 - -
Dere01g0309 351 ProSiteProfiles Zinc finger C2H2 type domain profile. 229 251 IPR013087 -
Dere01g0309 351 MobiDBLite consensus disorder prediction 245 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0309 Dere-ChrDere01 7565489 7566544 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0309 6 351 C2H2 Transcription Factor Family AT5G04390 42.746 1.14e-79 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere01g0309 zf-C2H2_6 1.9e-12 CL0361