Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0304 ATGGGTCGCGAAACTTTGCCACTTCCAGCTCCATCAGCCCCAGCAGTCACAACACCGAATCCAACATCCCTAGTAGTAGCACCACAAGCTCCTCCTACATCACTTGCTCCTGGGTTTCGCTTCCACCCAACTGACGAGGAGCTCGTTATTTACTACCTCAAGCGCAAGGTCTGTGGGAAAACCTTCCGATTTGATGCAATCTCTGAGGTCGACATTTACAGAAGCGAGCCATGGGACCTAGCAGACAAGTCGAGGTTGAAGACGAGGGACCAGGAATGGTATTTTTTTAGTGCATTAGACAAGAAATACGGTAATGGAGGGAGGATGAACAGGGCGACGAGCAAAGGGTACTGGAAAGCAACAGGAAATGATCGAGCAGTGAGGCATGAACAAAGGACCGTGGGGCTGAAGAAAACTTTAGTATTTCATAGTGGAAGGGCTCCAGATGGTAAGCGTACCAACTGGGTTATGCATGAGTACAGGCTTGTTGATGACGAGCTGGAAAGAGCTGGAATTGGATCCACACAGGATGCATATGTTTTGTGTAGAGTATTTCACAAAAATAACATAGGACCTCCGAATGGTCAACGTTATGCACCTTTCATTGAGGAGGAATGGGATGACACGTCAACTCTGATTCCTGGGGTAGAGCCTGTAGATGAAACTAAAGCTGTCCGTCATCCACTCATTGAAGGCAATGGTCATGTTGGATGTACCGAAGGGAATAATGTCGTACAGGATACTTTATCCATCAATAAAGTTCCTCTTGATGTGAATAAGCTTCCAATTGAAACCCAAAATCTTCTAGCTGTCTGCAAGAGGGAGAGTATGGCTGAGTATCCATCGCCAGGGAAGGACAATTCGAAGTCGATGGATGAGTACCCTTCACCACAAACAGATAATCCGAAGCCCTTCTCACTAATATACAAAAGGCGGCGGCATAACTCTAGTCATTCAAATGCTCCTGAGCATTCAACCCGAAACAGCCAGGATCTGTGCTCATCTATAATAACAACTGCTGCAACGACATTACCTACTACAACCACCACCACAACTACTAGTACTTCATCAAGAAAACATTTTTTGTCTGCATTGGTCGAATTTTCTCTACTTGAATCACTCGAACCCAAGGAAAGACCTTCGGTTGAGCCACCAGAATTCGATCTTTCTAATCTTGACTCACCTGTGCCTCCTAGTTGCTTGAAGTTCATCCAGCACTTGCAGAGTGAGGTTCGCAAGCTCTCAGTTGAAAGGGAGACTATGAAGTTTGAGATGATGAGTGCCCAGGCCATGATAAACATTCTCCAATCTCGGATCGACCTTCTGACCAAAGAGAACGAGGACTTGAAGAGAAGCACTGAAACCGGTTAG 1371 0.4602 MGRETLPLPAPSAPAVTTPNPTSLVVAPQAPPTSLAPGFRFHPTDEELVIYYLKRKVCGKTFRFDAISEVDIYRSEPWDLADKSRLKTRDQEWYFFSALDKKYGNGGRMNRATSKGYWKATGNDRAVRHEQRTVGLKKTLVFHSGRAPDGKRTNWVMHEYRLVDDELERAGIGSTQDAYVLCRVFHKNNIGPPNGQRYAPFIEEEWDDTSTLIPGVEPVDETKAVRHPLIEGNGHVGCTEGNNVVQDTLSINKVPLDVNKLPIETQNLLAVCKRESMAEYPSPGKDNSKSMDEYPSPQTDNPKPFSLIYKRRRHNSSHSNAPEHSTRNSQDLCSSIITTAATTLPTTTTTTTTSTSSRKHFLSALVEFSLLESLEPKERPSVEPPEFDLSNLDSPVPPSCLKFIQHLQSEVRKLSVERETMKFEMMSAQAMINILQSRIDLLTKENEDLKRSTETG 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0304 456 Pfam No apical meristem (NAM) protein 37 162 IPR003441 GO:0003677|GO:0006355
Dere01g0304 456 Coils Coil 404 452 - -
Dere01g0304 456 Gene3D NAC domain 44 190 IPR036093 GO:0003677|GO:0006355
Dere01g0304 456 ProSiteProfiles NAC domain profile. 35 187 IPR003441 GO:0003677|GO:0006355
Dere01g0304 456 MobiDBLite consensus disorder prediction 277 305 - -
Dere01g0304 456 FunFam Nac domain-containing protein 86 44 190 - -
Dere01g0304 456 SUPERFAMILY NAC domain 29 188 IPR036093 GO:0003677|GO:0006355
Dere01g0304 456 MobiDBLite consensus disorder prediction 1 22 - -
Dere01g0304 456 MobiDBLite consensus disorder prediction 289 303 - -
Dere01g0304 456 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 34 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0304 Dere-ChrDere01 7502452 7509237 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0304 1 456 NAC Transcription Factor Family AT3G10480 43.091 6.89e-120 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Dere01g0304 NAM 4.8e-36 No_clan