LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere01g0304	ATGGGTCGCGAAACTTTGCCACTTCCAGCTCCATCAGCCCCAGCAGTCACAACACCGAATCCAACATCCCTAGTAGTAGCACCACAAGCTCCTCCTACATCACTTGCTCCTGGGTTTCGCTTCCACCCAACTGACGAGGAGCTCGTTATTTACTACCTCAAGCGCAAGGTCTGTGGGAAAACCTTCCGATTTGATGCAATCTCTGAGGTCGACATTTACAGAAGCGAGCCATGGGACCTAGCAGACAAGTCGAGGTTGAAGACGAGGGACCAGGAATGGTATTTTTTTAGTGCATTAGACAAGAAATACGGTAATGGAGGGAGGATGAACAGGGCGACGAGCAAAGGGTACTGGAAAGCAACAGGAAATGATCGAGCAGTGAGGCATGAACAAAGGACCGTGGGGCTGAAGAAAACTTTAGTATTTCATAGTGGAAGGGCTCCAGATGGTAAGCGTACCAACTGGGTTATGCATGAGTACAGGCTTGTTGATGACGAGCTGGAAAGAGCTGGAATTGGATCCACACAGGATGCATATGTTTTGTGTAGAGTATTTCACAAAAATAACATAGGACCTCCGAATGGTCAACGTTATGCACCTTTCATTGAGGAGGAATGGGATGACACGTCAACTCTGATTCCTGGGGTAGAGCCTGTAGATGAAACTAAAGCTGTCCGTCATCCACTCATTGAAGGCAATGGTCATGTTGGATGTACCGAAGGGAATAATGTCGTACAGGATACTTTATCCATCAATAAAGTTCCTCTTGATGTGAATAAGCTTCCAATTGAAACCCAAAATCTTCTAGCTGTCTGCAAGAGGGAGAGTATGGCTGAGTATCCATCGCCAGGGAAGGACAATTCGAAGTCGATGGATGAGTACCCTTCACCACAAACAGATAATCCGAAGCCCTTCTCACTAATATACAAAAGGCGGCGGCATAACTCTAGTCATTCAAATGCTCCTGAGCATTCAACCCGAAACAGCCAGGATCTGTGCTCATCTATAATAACAACTGCTGCAACGACATTACCTACTACAACCACCACCACAACTACTAGTACTTCATCAAGAAAACATTTTTTGTCTGCATTGGTCGAATTTTCTCTACTTGAATCACTCGAACCCAAGGAAAGACCTTCGGTTGAGCCACCAGAATTCGATCTTTCTAATCTTGACTCACCTGTGCCTCCTAGTTGCTTGAAGTTCATCCAGCACTTGCAGAGTGAGGTTCGCAAGCTCTCAGTTGAAAGGGAGACTATGAAGTTTGAGATGATGAGTGCCCAGGCCATGATAAACATTCTCCAATCTCGGATCGACCTTCTGACCAAAGAGAACGAGGACTTGAAGAGAAGCACTGAAACCGGTTAG	1371	0.4602	MGRETLPLPAPSAPAVTTPNPTSLVVAPQAPPTSLAPGFRFHPTDEELVIYYLKRKVCGKTFRFDAISEVDIYRSEPWDLADKSRLKTRDQEWYFFSALDKKYGNGGRMNRATSKGYWKATGNDRAVRHEQRTVGLKKTLVFHSGRAPDGKRTNWVMHEYRLVDDELERAGIGSTQDAYVLCRVFHKNNIGPPNGQRYAPFIEEEWDDTSTLIPGVEPVDETKAVRHPLIEGNGHVGCTEGNNVVQDTLSINKVPLDVNKLPIETQNLLAVCKRESMAEYPSPGKDNSKSMDEYPSPQTDNPKPFSLIYKRRRHNSSHSNAPEHSTRNSQDLCSSIITTAATTLPTTTTTTTTSTSSRKHFLSALVEFSLLESLEPKERPSVEPPEFDLSNLDSPVPPSCLKFIQHLQSEVRKLSVERETMKFEMMSAQAMINILQSRIDLLTKENEDLKRSTETG	456

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere01g0304	456	Pfam	No apical meristem (NAM) protein	37	162	IPR003441	GO:0003677\|GO:0006355
	Dere01g0304	456	Coils	Coil	404	452	-	-
	Dere01g0304	456	Gene3D	NAC domain	44	190	IPR036093	GO:0003677\|GO:0006355
	Dere01g0304	456	ProSiteProfiles	NAC domain profile.	35	187	IPR003441	GO:0003677\|GO:0006355
	Dere01g0304	456	MobiDBLite	consensus disorder prediction	277	305	-	-
	Dere01g0304	456	FunFam	Nac domain-containing protein 86	44	190	-	-
	Dere01g0304	456	SUPERFAMILY	NAC domain	29	188	IPR036093	GO:0003677\|GO:0006355
	Dere01g0304	456	MobiDBLite	consensus disorder prediction	1	22	-	-
	Dere01g0304	456	MobiDBLite	consensus disorder prediction	289	303	-	-
	Dere01g0304	456	PANTHER	PROTEIN CUP-SHAPED COTYLEDON 2-RELATED	34	317	-	-

Showing 1 to 10 of 10 entries

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere01g0304	Dere-ChrDere01	7502452	7509237	Proximal

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere01g0304	1	456	NAC Transcription Factor Family	AT3G10480	43.091	6.89e-120	358

Showing 1 to 1 of 1 entries

Transcription factors information

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NAC	Dere01g0304		NAM	4.8e-36	No_clan

Showing 1 to 1 of 1 entries