Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0286 ATGAGCCTGAGGAGCGCATTTCCTCGATCTTCTGCTGCTTTTCTCTCCACTGAGACCTGTACTGAGCATTTCGCATTTGTTATGAACTGTCTCCGGAATCTTCCTTTGTCCTCGGGTTTGCCTTTCCAATGCTTAAGAAGCCATCAAAGGAAGCCTCTTTGCTCTGCCAGTTTGGGAATGGCCAATACTTGTGATCCAAATCGAAGCATGGCAGTGAAGTCTGCTTCTGGTTCTATGTCCAGTACAGAGACGAATAGTGCCAATATGGATGAGGAGAAGTCTGAGACATATAGTCATGACATGACAGAAGCCATGGGTGCTGTTTTGACTTATAGACATGAACTCGGGATGAACTACAACTTCATCCGTCCGGACTTAATTGTGGGGTCATGCCTACAGACTCCCGAAGATGTTGACAAGCTTCGTGCAATAGGAGTGAAAACTATTTTTTGCTTGCAGCAAGATCCAGACCTAGAATATTTTGGAGTTGATATCAATGCCATACAAGAATATGCCTGGTCTTGCAATGACATTCAACACTTGCGTGCTGAGATAAGGGACTTTGATGCATTTGATTTACGGATGAGGCTTCCAACTGTAGTTAGCAAATTGTACAAGGCAATAAATCGAAATGGAGGTGTGACATATATACATTGCACTGCTGGACTTGGAAGAGCTCCTGCTGTTGCGTTGGCATATATGTTTTGGGTTCAGGGTTATAAACTTGATGAGGCTTATAGATTGCTCATGAGCAAAAGGTCTTGCTTCCCAAAATTGGATGCGATTAAAAGTGCGACAGCTGATATTCTTACAGGCCTCAGTAAAAAGCTTGTCACGTTGACATGGGAAGACAGCAATTGCTCGTCAGTTGAAATTTCTGGACTTGATATTGGATGGGGCCAGAGAATGCCCCTGCATTTTGATGACAAACAGGGTTTGTGGGTTCTCAAGAGGGAATTGCCTGATGGACATTATGAGTACAAGTACATCGTTGATGGGGAGTGGACATGCAATAAGTATGAGCTAGTGACCTCTCCCAATAAAGATGGCCATGTCAATAATTTTCTGCAGGTCCTTGACGACAATACAAGCTGTGTTAATGCCTCCCTAAGGAAGAGGTTGACTGGTGATGATCCTGATCTCACAAAGGATGAACGGCTGAGAATAAGACAGTTTCTTGAGGCTTGTCCTGATGAAGAAGAACATTGA 1209 0.4376 MSLRSAFPRSSAAFLSTETCTEHFAFVMNCLRNLPLSSGLPFQCLRSHQRKPLCSASLGMANTCDPNRSMAVKSASGSMSSTETNSANMDEEKSETYSHDMTEAMGAVLTYRHELGMNYNFIRPDLIVGSCLQTPEDVDKLRAIGVKTIFCLQQDPDLEYFGVDINAIQEYAWSCNDIQHLRAEIRDFDAFDLRMRLPTVVSKLYKAINRNGGVTYIHCTAGLGRAPAVALAYMFWVQGYKLDEAYRLLMSKRSCFPKLDAIKSATADILTGLSKKLVTLTWEDSNCSSVEISGLDIGWGQRMPLHFDDKQGLWVLKRELPDGHYEYKYIVDGEWTCNKYELVTSPNKDGHVNNFLQVLDDNTSCVNASLRKRLTGDDPDLTKDERLRIRQFLEACPDEEEH 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0286 402 CDD DSP_laforin-like 117 264 IPR045204 GO:0019203
Dere01g0286 402 Pfam Glycogen recognition site of AMP-activated protein kinase 278 361 IPR032640 -
Dere01g0286 402 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 115 260 IPR029021 -
Dere01g0286 402 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 54 399 - -
Dere01g0286 402 CDD E_set_AMPKbeta_like_N 278 358 - -
Dere01g0286 402 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 195 253 IPR000387 GO:0016311|GO:0016791
Dere01g0286 402 SMART dsp_5 118 268 IPR020422 GO:0006470|GO:0008138
Dere01g0286 402 MobiDBLite consensus disorder prediction 71 87 - -
Dere01g0286 402 SUPERFAMILY E set domains 276 359 IPR014756 -
Dere01g0286 402 Gene3D Immunoglobulins 273 363 IPR013783 -
Dere01g0286 402 Gene3D Protein tyrosine phosphatase superfamily 111 392 IPR029021 -
Dere01g0286 402 FunFam Phosphoglucan phosphatase DSP4, chloroplastic 273 363 - -
Dere01g0286 402 FunFam Phosphoglucan phosphatase DSP4, chloroplastic 111 294 - -
Dere01g0286 402 MobiDBLite consensus disorder prediction 71 94 - -
Dere01g0286 402 Pfam Dual specificity phosphatase, catalytic domain 161 256 IPR000340 GO:0008138|GO:0016311
Dere01g0286 402 ProSiteProfiles Dual specificity protein phosphatase domain profile. 118 275 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0286 Dere-ChrDere01 7301391 7311716 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0286 117 400 Protein tyrosine phosphatase (PTP) family AT3G52180 72.183 1.77e-156 441