Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0283 ATGAAATCGAGCAATCCGATCATCGTGTCTAGCAGTCCCATTCATCCTGAAATGAGTTTAGCCTTCGAGCAAGCGTGGGTTACTGGACGTCATTGGCAAAGACGAAATAGAGTGTTCCAATCATTGTGTCCAGCGATTCCATTCATTGATTCCGTTTTGATGAATGTTTGGGTTTCCGGCGAAGCTGAATATTTGCTGACTCTATTCATTGATTTCGTTATGATGGAAGTTTGGGTTTCCAGTGATTCAGTCCTGACGAAGGCTCCGATTTACGGTTGGGGCGGGAAGACGATATTCAATCTCGGTCGTCGGTGCCTCGTGCCTCTGTCAGTCCAGTTTCTAGTAAAGATGGGCGAGGGGCTGGACAATGACACTCTTAAGAGGGTCAAGGCTTCCACTGAACAGGATATTTCTGATGAGTTAGATCTGAAAATAAAGAAGTATCTGAGAGGAGATGGTGCAAATTTGGAGGCTTTGAAAGATAAAAAACTGAAGGGTCAACTTTCTGTTAGAGAAGAATTATATAGTAAATCTGCCAAAGTTGCTGCCAAGGCAGATAAGTGGCTTGTGCCCAGTGAGGGAGGTTATCTAGAGACTGAAGGCATAGAGAAAACATGGAGGATTAAACAGGAGGCAATAGCTAAAGAAGTAGATATTTTAAGCTCAAGAAAGCAATATGATATTATTTTACCAGAACTTGGCCCGTACACATTGGATTTTACTTCAAGTGGCCGGTATATGGCTATTGGAGGGCGTAAGGGCCATCTGGGAATTGTGGATGTGATGAATATGAGCCTAATCAGAGAGTTTCAGGTTAGAGAAACAGTCCGTGATGTGGCATTCTTGCATAATGAGCTGTTTTTTGCTGCTGCCCAGAAAAAGTATCCTTACATCTATAACCGTGATGGAACAGAGCTTCACTGCCTTAAGGAACATGGTGCAGTGTTAAGGCTTCAATTTCTAAAAAATCACTTTCTTCTGGCTTCAATAAACAAATTTGGGCAGCTTCATTATCAGGACGTTACGATGGGTGCAATGGTTGGTAACATTCGAACTGGTTTGGGTCGTACTAATGTGATGCAAGTGAATCCCTTCAATGGGGTTGTTGCTTTGGGTCATTCAAGTGGTACGGTCACTATGTGGAAGCCCACAACCTCAGCTCCTCTTGTAAAGATGCTGTGTCATCATGGTCCTCTCTCAGCTCTGGCATTTCACTCAAATGGCCACTTAATGGCCACGGCTGGGAAGGACAAGAAAGTCAAGCTTTGGGACTTGAGGAAATTTGAGGTTTTCCAGACATTACCAGGCCATGCAAACACCTTGGATTTTAGTCAAAAAGGCTTACTTGCTTGTGGTACTGGATCTTTTATACAGGTTCTGGGTGATCTTTCTGGTTCTCAGAATTATTCTAGGTATATGACTCATTCCATGGTTAAAGGGTACCAGGTAGGAAAGTTAGTGTTTCGTCCATATGAAGATGTTCTTGGCATAGGGCATTCCATGGGTTGGTCCAGCATTCTTATTCCTGGATCAGGAGAACCTAACTTTGACTCGTGGGTTGCCAATCCATTTGAAACCTCTAAACAGAGAAGAGAGAAGGAAGTGCGCTCTCTTCTTGATAAGTTGCCCCCTGAGACGATCATGTTGGATCCAAGCAAAATTGGTACATTGAAACCGACAAAGAAAGAGAAGGCAACAAGGAAGGGGAGGGGGGCTGAGATGGAAGCTGTTGATGAAGCTGCCAAGGACATGAAAATGAAGAAGAAAACAAAAGGAAGAAATAAGCCAAGCAAGAAGGTGAAGAAAAAGCAGGAAGCTATTGCGAAAGTGAAGAGGCCTTTCTTGGAGGAGAAAATTAAGGAGGAAGAAATATCCCGAAAGAAGCAGAAAGTTAGTGAGGAAGTTCGTTTACCAAAATCCTTAGAAAGGTTTGCTGGTAAAAAACCAGCAGCATGA 1956 0.4325 MKSSNPIIVSSSPIHPEMSLAFEQAWVTGRHWQRRNRVFQSLCPAIPFIDSVLMNVWVSGEAEYLLTLFIDFVMMEVWVSSDSVLTKAPIYGWGGKTIFNLGRRCLVPLSVQFLVKMGEGLDNDTLKRVKASTEQDISDELDLKIKKYLRGDGANLEALKDKKLKGQLSVREELYSKSAKVAAKADKWLVPSEGGYLETEGIEKTWRIKQEAIAKEVDILSSRKQYDIILPELGPYTLDFTSSGRYMAIGGRKGHLGIVDVMNMSLIREFQVRETVRDVAFLHNELFFAAAQKKYPYIYNRDGTELHCLKEHGAVLRLQFLKNHFLLASINKFGQLHYQDVTMGAMVGNIRTGLGRTNVMQVNPFNGVVALGHSSGTVTMWKPTTSAPLVKMLCHHGPLSALAFHSNGHLMATAGKDKKVKLWDLRKFEVFQTLPGHANTLDFSQKGLLACGTGSFIQVLGDLSGSQNYSRYMTHSMVKGYQVGKLVFRPYEDVLGIGHSMGWSSILIPGSGEPNFDSWVANPFETSKQRREKEVRSLLDKLPPETIMLDPSKIGTLKPTKKEKATRKGRGAEMEAVDEAAKDMKMKKKTKGRNKPSKKVKKKQEAIAKVKRPFLEEKIKEEEISRKKQKVSEEVRLPKSLERFAGKKPAA 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0283 651 SMART BING4CT_2 471 551 IPR012952 -
Dere01g0283 651 Pfam BING4CT (NUC141) domain 472 550 IPR012952 -
Dere01g0283 651 SMART WD40_4 427 461 IPR001680 GO:0005515
Dere01g0283 651 SMART WD40_4 385 424 IPR001680 GO:0005515
Dere01g0283 651 SMART WD40_4 343 382 IPR001680 GO:0005515
Dere01g0283 651 SMART WD40_4 221 260 IPR001680 GO:0005515
Dere01g0283 651 SMART WD40_4 263 300 IPR001680 GO:0005515
Dere01g0283 651 Pfam WD domain, G-beta repeat 393 424 IPR001680 GO:0005515
Dere01g0283 651 PANTHER WD-REPEAT PROTEIN BING4 128 645 IPR040315 -
Dere01g0283 651 Gene3D - 232 338 IPR015943 GO:0005515
Dere01g0283 651 MobiDBLite consensus disorder prediction 623 651 - -
Dere01g0283 651 FunFam U3 small nucleolar RNA-associated protein 7 224 506 - -
Dere01g0283 651 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 392 426 - -
Dere01g0283 651 SUPERFAMILY WD40 repeat-like 225 498 IPR036322 GO:0005515
Dere01g0283 651 ProSiteProfiles Trp-Asp (WD) repeats profile. 392 433 IPR001680 GO:0005515
Dere01g0283 651 Gene3D - 347 466 IPR015943 GO:0005515
Dere01g0283 651 MobiDBLite consensus disorder prediction 559 586 - -
Dere01g0283 651 ProSitePatterns Trp-Asp (WD) repeats signature. 411 425 IPR019775 -
Dere01g0283 651 MobiDBLite consensus disorder prediction 559 606 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0283 234 447 U-box Gene Family AT1G04510 25.000 4.56e-11 63.9