Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0257 ATGCATGGTACTCCATCTGATAGCAGCAATAATCGGTTTCAGAGAACTTTTCCGGCGAGGGAAACATCTTCTCCGGCAGCCGTGGGTGGTGGCAATTTGCAACCCATGAATGTGGCTGACGAGTTTGTTCACTGGAAGGGACAAGCATCGTTCAAGAGTTGGGCGAAGCAAACTGAGGAGAGCTACCAGTTGCAGCAGGCTCTGGCGCTTCGTCTCTCATCGCAGGCTGCTTGTGCGGATGATCCCAATTTCTTGGACTTGGAATCCAGCCCTTCCTCCAATTCGGCTGAGGCAGTGTCACATCGATTCTGGGTCAATGGTTGTTTGCAATACTCGGACAAAATTCCAGATGGATTTTATCTTATCCACGGGATGGATGTGTATTCTTGGACTATAAGTGCTGATCTGCAAAATGTTGGTCTGATTCCATCATTTGAATCATTGATGTCAGTTGAACCATGTGCTGATTTGTCAATTGTAGTGGTTGCTATTGATAAATCAAGAGATCCTGGTTTGAGAGAACTACTAAGTGCTATAGTTAGTCTTTCCAATAGCTGGATTTCTAAAAAGGATGCGATTGATAATCTGGCAAATCTTGTTTGCAGTAGGTTGGGGGGTGAAGCCTGGACTGAAGAAAACTTAGTTACACACTGGAAAGAGTGCAGTCAAATCCTAAAAGATGTCCTGCATTCTGTCGTTCTTCCAATTGGAAGCTTAACTGTTGGCCTTTGCGCCCATCGAGCATTGCTCTTTAAAGTATTAGCTGACTCAGTCAACCTCCCATGCCGAATTGCCAAGGGCTGTAAGTATTGTAAAAAGGATGTAGGTGCCTCATGTTTAGTGCAACTTGGTCCTGACAGGGAGTATTTCATTGATTTGGTTGGAAGGCCAGGGGCTATGAGCCAGCCTGATTCTTCACTGAATTCTGCATCTTCAGTATTAATTGCTTCACCACTGTGTCATCCAAAGTTCAAGCCAGTTGAAACAACTAAATATTCAAAGACCTTAGCTCAATTGTATTTCTTGGACTGTCAAGGGCTGCATCTTGTATTTGATACCAAGTCAGGTAACACTGTTGATCACAGTGATGGAATGGGTCCAAAGCCAACTGAAGCTTTTAATGCTAACTACGTGGGTGAGAACAATCATCTGTCTGCTACGAGTAAGAAAGATTATGCGTTATTCAGAAAAGCAAACCAGTCAATATTGAATAGTCCGAGTCATGAAGTTGATCTTGATGAGGATGATCTGGACATTTTATGGAGTGAACTTACTTTGAAAGGGAAAGTTGGAACAGGTTCATTTGGAACTGTCTTTTGTGCTGATTGGCGTGGCTCTGATGTTGCTGTGAAAATGCTAAAGGTGCAAGGTTTTGATGCAGAACTATATGAAGAATTTAGAAAGGAGGTCTCACTCATGAAACGTCTGCGGCATCCAAACATTGTTCTTTTAATGGGTGCAGTCTTTCAACAACCCAACTTGTCCATAGTGACAGAATATTTATCAAGAGGAAGCTTGTTTGAACTTCTACGCATGCCAGATGCTAGATTAGTTCTCAGTGAGAAGCGTCGGTTAAGTATGGCTTATGATGTGGCAAGTGGAATGAATTATCTTCATCAAATGAGACCTCCCATAGTTCATAGAGATCTGAAGTCTCCAAATCTTTTGGTGGATGATACATATACAGTTAAGGTAGGTGATTTTGGTCTCTCCCGTACCAAGGCAAATACATTTCTTTCATCTAAAACAGCTGCAGGGACTCCTGAGTGGATGGCGCCAGAAGTCATCCGTGGAGAACTATCAAATGAAAAATGTGACATATTCAGCTTTGGTGTAATATTGTGGGAACTAGTGACCCTGCAACAACCTTGGAGAAATTTAAATCCTTCACAGGTTGTCGCAGCTGTAGGTTTCATGGGCAAGAGATTAGAGATTCCGAGCTACGTGAATCCTCGAGTGGCTGCGTTGATTGAGCTCTGCTGCTCCATTGAACCCTCGAGACGTCCTTCTTTCTCCTATATCATGAACTGTTTGCAGCAAATGATTACCGATGCTCAAGGGTAA 2064 0.4312 MHGTPSDSSNNRFQRTFPARETSSPAAVGGGNLQPMNVADEFVHWKGQASFKSWAKQTEESYQLQQALALRLSSQAACADDPNFLDLESSPSSNSAEAVSHRFWVNGCLQYSDKIPDGFYLIHGMDVYSWTISADLQNVGLIPSFESLMSVEPCADLSIVVVAIDKSRDPGLRELLSAIVSLSNSWISKKDAIDNLANLVCSRLGGEAWTEENLVTHWKECSQILKDVLHSVVLPIGSLTVGLCAHRALLFKVLADSVNLPCRIAKGCKYCKKDVGASCLVQLGPDREYFIDLVGRPGAMSQPDSSLNSASSVLIASPLCHPKFKPVETTKYSKTLAQLYFLDCQGLHLVFDTKSGNTVDHSDGMGPKPTEAFNANYVGENNHLSATSKKDYALFRKANQSILNSPSHEVDLDEDDLDILWSELTLKGKVGTGSFGTVFCADWRGSDVAVKMLKVQGFDAELYEEFRKEVSLMKRLRHPNIVLLMGAVFQQPNLSIVTEYLSRGSLFELLRMPDARLVLSEKRRLSMAYDVASGMNYLHQMRPPIVHRDLKSPNLLVDDTYTVKVGDFGLSRTKANTFLSSKTAAGTPEWMAPEVIRGELSNEKCDIFSFGVILWELVTLQQPWRNLNPSQVVAAVGFMGKRLEIPSYVNPRVAALIELCCSIEPSRRPSFSYIMNCLQQMITDAQG 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0257 687 SMART serkin_6 424 682 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g0257 687 ProSiteProfiles Protein kinase domain profile. 424 682 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g0257 687 PRINTS Tyrosine kinase catalytic domain signature 586 596 IPR001245 GO:0004672|GO:0006468
Dere01g0257 687 PRINTS Tyrosine kinase catalytic domain signature 605 627 IPR001245 GO:0004672|GO:0006468
Dere01g0257 687 PRINTS Tyrosine kinase catalytic domain signature 539 557 IPR001245 GO:0004672|GO:0006468
Dere01g0257 687 PRINTS Tyrosine kinase catalytic domain signature 498 511 IPR001245 GO:0004672|GO:0006468
Dere01g0257 687 PRINTS Tyrosine kinase catalytic domain signature 649 671 IPR001245 GO:0004672|GO:0006468
Dere01g0257 687 SUPERFAMILY Protein kinase-like (PK-like) 402 678 IPR011009 -
Dere01g0257 687 FunFam Serine/threonine-protein kinase isoform 1 414 502 - -
Dere01g0257 687 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 91 683 - -
Dere01g0257 687 CDD STKc_MAP3K-like 430 676 - -
Dere01g0257 687 ProSitePatterns Serine/Threonine protein kinases active-site signature. 545 557 IPR008271 GO:0004672|GO:0006468
Dere01g0257 687 ProSitePatterns Protein kinases ATP-binding region signature. 430 451 IPR017441 GO:0005524
Dere01g0257 687 Gene3D Phosphorylase Kinase; domain 1 417 502 - -
Dere01g0257 687 Pfam Ethylene-responsive protein kinase Le-CTR1 96 300 - -
Dere01g0257 687 FunFam PAS domain-containing protein tyrosine kinase family protein 502 687 - -
Dere01g0257 687 Gene3D Transferase(Phosphotransferase) domain 1 503 686 - -
Dere01g0257 687 Pfam Protein tyrosine and serine/threonine kinase 424 678 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0257 Dere-ChrDere01 6980733 6992770 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0257 54 685 MAP Kinase Kinase Kinase AT5G03730 58.157 0.0 701
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Dere01g0257 PK_Tyr_Ser-Thr 3.5e-64 CL0016