Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0254 ATGTCGGCCTTTCTCAGTCCCGTCCACTTCACTTTCTCACTCCCATGGCTTTTCCCTTTTCTAGGTTTTTCGATTCATTTTGAATTTGGGGTGGTCGAGTGGGAAATTTTGGTCATGATGATATCTTCTGGGGTGAACTTGGTGATGACTGTGATTGGATTTGCGGTGAGCACTACGTTCATCGTTTTCGTTTGCACTAGACTTGTCTGTGCTCGAATTCACCTGAATGCTTCCCGCCGATCCTTCCCTGTTGCTTACAGATCCGATCTCAACCTGCTGGAGCGGAGATTTCATGGTCTTGAACCCTTAGCAGTAGCGAACTTTCCGACGAAGAAGTACAGTGACGAATTTTTTGCTGCTGCAGAAAATTCTCAATGCATTGTCTGTCTTTCAGAGTACCAAGGTGAAGATGTACTGCGCATTCTCCCCTATTGTGGACACTTCTTCCATGTGACCTGCATAGACCTATGGCTTGCACAGCATTCCACATGTCCCGTCTGTCGAATCTCGTTACGCCAATTATCTGAGAGAAATCGCATAATGCAACCCTTATTCAGCTCTGCTGTTCGATCTAACTCTGGTGCAGAATCTGTTGACGCTAGTTCTTATAATTTTATGATGGCTAATGATGAGTTATCGTCAAGAAATCCTGATACACATGGGGTGAACCCTACAGAAGAGGATCATTATGCATCTGAGGGTGGAGGAGTGGTTGATATAGAGAATGTCACCCATTTGAGCTATGGTAATCAGAACATGAAAGATGCAGGAAACAAGCATGTAGAGAGCCCATCAATACCCTTAGGTTAA 810 0.4469 MSAFLSPVHFTFSLPWLFPFLGFSIHFEFGVVEWEILVMMISSGVNLVMTVIGFAVSTTFIVFVCTRLVCARIHLNASRRSFPVAYRSDLNLLERRFHGLEPLAVANFPTKKYSDEFFAAAENSQCIVCLSEYQGEDVLRILPYCGHFFHVTCIDLWLAQHSTCPVCRISLRQLSERNRIMQPLFSSAVRSNSGAESVDASSYNFMMANDELSSRNPDTHGVNPTEEDHYASEGGGVVDIENVTHLSYGNQNMKDAGNKHVESPSIPLG 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0254 269 SMART ring_2 126 167 IPR001841 -
Dere01g0254 269 Pfam Ring finger domain 125 168 IPR001841 -
Dere01g0254 269 ProSiteProfiles Zinc finger RING-type profile. 126 168 IPR001841 -
Dere01g0254 269 SUPERFAMILY RING/U-box 120 173 - -
Dere01g0254 269 CDD RING-H2_EL5-like 125 168 - -
Dere01g0254 269 PANTHER OS11G0150450 PROTEIN 40 226 - -
Dere01g0254 269 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 173 IPR013083 -
Dere01g0254 269 MobiDBLite consensus disorder prediction 249 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0254 Dere-ChrDere01 6954201 6957051 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0254 108 234 C3H Transcription Factor Family AT4G10150 37.594 3.83e-20 84.7